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JQ965645.1__AFL47029.1__SSU5_102__00102

Bact-Vir

JQ965645.1__AFL47029.1__SSU5_102__00102

Identity

Accession:
JQ965645 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SSU5

TaxID: 1177632

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: rep: NC_021067.1__YP_007877228.1__VPBG_00067__00066__D2-64
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14001.13 best YdfZ 102.9 1.40e-29 100.0% 100.0%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.77 64.0 6.00e-01 100.0% 74.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.75 69.0 6.57e-01 100.0% 95.9%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.73 59.0 5.52e-01 87.5% 93.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.71e-01 100.0% 83.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 6.09e-01 90.6% 96.8%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.71 59.0 5.63e-01 89.1% 100.0%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 6.06e-01 100.0% 95.9%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.35e-01 85.9% 90.3%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.70 59.0 5.65e-01 100.0% 79.5%
2xfmA00 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.69 61.0 4.88e-01 96.9% 96.7%
1yvuA02 2.30.340.10 Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily 0.68 58.0 5.10e-01 93.8% 96.8%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 60.0 5.06e-01 98.4% 76.0%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 4.78e-01 92.2% 80.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.29e-01 84.4% 100.0%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 58.0 5.14e-01 96.9% 93.3%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 58.0 4.96e-01 98.4% 92.0%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.64 54.0 4.90e-01 95.3% 100.0%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 51.0 4.34e-01 93.8% 75.0%
1g7sA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 52.0 4.74e-01 96.9% 97.8%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 3.97e-01 93.8% 51.5%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.31e-01 92.2% 67.5%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 4.50e-01 98.4% 86.4%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.63e-01 82.8% 88.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.41e-01 96.9% 76.5%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 50.0 4.61e-01 98.4% 94.3%
2h5eA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 3.71e-01 95.3% 50.0%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 42.0 3.65e-01 98.4% 52.6%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 43.0 3.76e-01 98.4% 55.3%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.56 46.0 4.25e-01 96.9% 92.1%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 43.0 3.75e-01 98.4% 54.6%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 39.0 3.51e-01 93.8% 52.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.12e-01 96.9% 75.8%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.54 39.0 3.53e-01 93.8% 54.4%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 45.0 3.69e-01 95.3% 52.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.54 38.0 3.78e-01 84.4% 72.7%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 3.55e-01 92.2% 48.9%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 46.0 4.11e-01 95.3% 89.1%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.54 39.0 3.55e-01 93.8% 55.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 46.0 4.52e-01 96.9% 97.2%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 40.0 3.50e-01 92.2% 51.9%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.57e-01 79.7% 76.5%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.52 43.0 3.69e-01 100.0% 56.0%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.52 43.0 4.12e-01 95.3% 97.3%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.71e-01 93.8% 72.3%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941729 4.1.1.157 ↗ beta barrels › SH3 › SH3 › SH3 › YdfZ 1.00 91.0 9.41e-01 93.8% 100.0%
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.92 78.0 8.08e-01 100.0% 95.0%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.92 77.0 6.68e-01 98.4% 62.2%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.91 75.0 8.09e-01 98.4% 100.0%
4385345 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 63.0 7.11e-01 89.1% 100.0%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 64.0 6.93e-01 92.2% 92.7%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 63.0 5.98e-01 90.6% 66.7%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 66.0 7.14e-01 93.8% 96.4%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.84 62.0 6.91e-01 89.1% 98.0%
4640515 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.84 61.0 6.88e-01 90.6% 98.0%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.83 62.0 6.92e-01 96.9% 100.0%
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.83 62.0 6.89e-01 96.9% 100.0%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 65.0 6.28e-01 100.0% 75.7%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.83 63.0 6.79e-01 92.2% 94.5%
4305196 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 61.0 6.78e-01 92.2% 100.0%
4116754 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 55.0 6.46e-01 82.8% 100.0%
4280256 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 60.0 6.65e-01 96.9% 98.0%
4336500 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 61.0 6.58e-01 98.4% 92.7%
4169657 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.81 59.0 6.56e-01 87.5% 98.0%
4058919 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.80 59.0 6.58e-01 93.8% 100.0%
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.80 58.0 6.49e-01 100.0% 98.0%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.80 62.0 6.65e-01 93.8% 96.4%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 60.0 6.41e-01 100.0% 92.7%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.78 63.0 6.15e-01 92.2% 78.6%
4627221 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.77 60.0 5.99e-01 92.2% 81.5%
3652661 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.76 70.0 5.46e-01 100.0% 96.2%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 59.0 6.14e-01 98.4% 90.0%
3465215 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.76 69.0 5.33e-01 100.0% 77.8%
3347851 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 56.0 5.50e-01 96.9% 72.9%
3329288 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.75 68.0 5.54e-01 100.0% 97.4%
3945489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 55.0 6.16e-01 96.9% 100.0%
3691410 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.03e-01 96.9% 93.1%
3713588 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.55e-01 95.3% 95.8%
3583597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.48e-01 100.0% 66.7%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.72 62.0 5.09e-01 93.8% 68.8%
3181439 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.26e-01 96.9% 94.4%
3592077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 64.0 4.80e-01 96.9% 95.9%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.71 63.0 5.83e-01 95.3% 98.8%
3269599 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.70 62.0 5.31e-01 96.9% 94.0%
3463102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 4.47e-01 93.8% 88.4%
3663761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.02e-01 93.8% 61.9%
3512784 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.69 62.0 4.91e-01 96.9% 86.4%
3815479 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.68e-01 93.8% 90.7%
3460634 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.69 62.0 4.69e-01 96.9% 81.4%
3636251 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.68 63.0 5.03e-01 100.0% 65.8%
3982999 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.68 63.0 5.35e-01 100.0% 75.0%
3650711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.44e-01 92.2% 94.7%
4965721 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.08e-01 100.0% 82.6%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.68 55.0 5.56e-01 92.2% 87.7%
4288345 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.68 60.0 4.84e-01 96.9% 85.8%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 61.0 4.88e-01 98.4% 65.0%
4158768 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.67 59.0 4.99e-01 96.9% 83.8%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 62.0 4.72e-01 100.0% 57.2%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 61.0 4.81e-01 100.0% 60.8%
4025294 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.67 61.0 5.39e-01 98.4% 83.3%
5058285 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.67 59.0 5.24e-01 96.9% 92.2%
4526968 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.67 58.0 4.93e-01 96.9% 84.8%
None — 0.67 59.0 5.03e-01 96.9% 89.0%
4146985 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.66 58.0 4.82e-01 96.9% 80.0%
4084726 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 4.83e-01 96.9% 87.6%
4027927 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.66 58.0 5.05e-01 96.9% 92.6%
4243239 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.66 57.0 4.51e-01 96.9% 72.3%
4381865 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.66 57.0 4.76e-01 96.9% 83.6%
4653293 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 56.0 4.74e-01 96.9% 85.5%
4551207 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.65 57.0 4.74e-01 96.9% 81.8%
4205494 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.65 58.0 4.72e-01 100.0% 80.0%
3392294 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.65 56.0 4.83e-01 96.9% 88.0%
4028218 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.64 55.0 4.38e-01 96.9% 67.7%
3590326 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.56 44.0 3.74e-01 98.4% 51.4%
None — 0.55 43.0 2.77e-01 98.4% 16.5%
3781314 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 4.17e-01 95.3% 92.2%
3782195 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 47.0 4.25e-01 95.3% 92.9%
4026033 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.54 44.0 3.73e-01 98.4% 52.7%
3177070 7558.1.1.0 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.53 45.0 4.20e-01 95.3% 98.8%
4508989 2007.1.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.52 35.0 2.48e-01 70.3% 46.8%
3920058 708.1.2.10 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.52 42.0 3.44e-01 98.4% 66.0%
5051417 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 32.0 3.47e-01 84.4% 80.0%