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JQ965645.1__AFL47037.1__SSU5_110__00110

Bact-Vir

JQ965645.1__AFL47037.1__SSU5_110__00110

Identity

Accession:
JQ965645 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-71
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.69 59.0 5.48e-01 98.4% 98.8%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 48.0 3.98e-01 80.3% 44.0%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 46.0 3.62e-01 77.0% 35.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 3.97e-01 73.8% 47.4%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 49.0 3.68e-01 82.0% 34.2%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.63 47.0 3.61e-01 82.0% 84.8%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.62 53.0 4.40e-01 100.0% 74.6%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 45.0 3.78e-01 80.3% 43.9%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 53.0 4.17e-01 100.0% 82.3%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.62 46.0 3.15e-01 80.3% 29.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.50e-01 73.8% 38.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.62 43.0 3.57e-01 73.8% 42.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 39.0 3.96e-01 70.5% 63.9%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.62 50.0 3.66e-01 95.1% 76.7%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.61 43.0 3.49e-01 75.4% 57.9%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 43.0 2.63e-01 73.8% 33.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 42.0 3.84e-01 73.8% 51.7%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 40.0 3.52e-01 70.5% 44.2%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.61 53.0 3.63e-01 100.0% 35.3%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.61 52.0 3.55e-01 100.0% 34.5%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.72e-01 90.2% 87.9%
4ihzA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.26e-01 78.7% 67.1%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 37.0 4.15e-01 80.3% 84.4%
1pj5A03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.60 48.0 3.53e-01 95.1% 78.3%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.60 50.0 3.65e-01 98.4% 85.9%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.05e-01 83.6% 86.4%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 40.0 2.93e-01 73.8% 40.2%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 49.0 3.43e-01 100.0% 32.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 49.0 4.18e-01 98.4% 57.1%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.72e-01 93.4% 90.5%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.58 42.0 3.45e-01 78.7% 41.0%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 50.0 3.81e-01 98.4% 77.4%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 40.0 3.41e-01 77.0% 42.2%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 38.0 3.45e-01 77.0% 48.8%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.57 46.0 3.67e-01 88.5% 69.4%
5b0hA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.57 39.0 3.06e-01 75.4% 33.1%
5a8iA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 49.0 4.03e-01 100.0% 77.6%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 48.0 3.31e-01 100.0% 32.4%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.57 41.0 3.92e-01 77.0% 71.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 36.0 3.15e-01 80.3% 40.4%
1v95A01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 47.0 3.92e-01 100.0% 85.3%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.56 37.0 3.39e-01 82.0% 48.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.84e-01 73.8% 69.7%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.55 45.0 3.02e-01 100.0% 96.0%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.18e-01 72.1% 69.7%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.36e-01 88.5% 62.7%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 4.02e-01 100.0% 97.6%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.77e-01 78.7% 89.4%
3ia1B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.29e-01 93.4% 65.5%
6jyxA01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.51 40.0 3.29e-01 88.5% 65.3%
2i06A01 3.50.14.10 Alpha Beta › 3-Layer(bba) Sandwich › Replication Terminator Protein (Tus); Chain A, domain 1 › Replication terminator Tus, domain 1 superfamily/Replication terminator Tus 0.51 42.0 2.99e-01 100.0% 81.8%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 40.0 2.99e-01 95.1% 74.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 33.0 3.27e-01 72.1% 60.0%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.50 42.0 3.29e-01 100.0% 57.8%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 38.0 3.02e-01 91.8% 85.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.78 53.0 6.02e-01 73.8% 95.6%
4297945 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.78 55.0 5.76e-01 73.8% 85.5%
4188237 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.76 55.0 5.82e-01 77.0% 90.9%
4992154 304.43.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.73 51.0 3.74e-01 73.8% 87.7%
3620870 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 50.0 4.34e-01 78.7% 50.0%
4927372 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 47.0 3.89e-01 78.7% 40.0%
3242661 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.67 50.0 4.38e-01 82.0% 93.7%
3280385 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.67 45.0 4.74e-01 75.4% 78.2%
3437709 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 45.0 4.80e-01 98.4% 88.0%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 48.0 3.91e-01 78.7% 40.9%
4004358 252.2.1.3 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.66 48.0 5.13e-01 95.1% 98.0%
3925335 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 47.0 3.80e-01 78.7% 40.0%
4997139 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 47.0 3.68e-01 90.2% 35.6%
3971431 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.64 55.0 5.00e-01 100.0% 72.6%
4966382 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 44.0 4.40e-01 100.0% 70.8%
5027564 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 45.0 3.50e-01 78.7% 33.3%
3281830 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 45.0 3.55e-01 78.7% 34.8%
4492006 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 45.0 2.96e-01 75.4% 17.4%
4064214 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 44.0 4.34e-01 75.4% 69.2%
3218939 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.62 55.0 3.53e-01 100.0% 29.1%
3603228 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 49.0 4.32e-01 90.2% 98.9%
5077660 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 3.57e-01 86.9% 34.0%
5045959 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 44.0 3.75e-01 78.7% 45.5%
3458876 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.61 52.0 3.51e-01 100.0% 31.6%
4419249 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.60 51.0 3.42e-01 100.0% 31.8%
3750640 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.60 46.0 3.82e-01 83.6% 72.7%
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.60 35.0 4.01e-01 73.8% 81.8%
3701513 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.59 46.0 3.78e-01 91.8% 56.2%
4929561 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.59 43.0 3.54e-01 82.0% 43.2%
3903295 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.59 39.0 3.19e-01 70.5% 35.2%
3476452 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 47.0 4.09e-01 95.1% 100.0%
4087972 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.58 46.0 4.29e-01 88.5% 83.5%
4948153 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 46.0 4.47e-01 91.8% 84.3%
3470536 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.58 49.0 3.92e-01 100.0% 52.6%
4964241 2008.1.1.162 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30170 0.58 47.0 3.70e-01 96.7% 73.1%
3735661 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 50.0 4.18e-01 96.7% 93.3%
4936584 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.57 49.0 4.33e-01 100.0% 92.6%
3414100 3080.1.1.0 a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins 0.57 45.0 2.95e-01 93.4% 69.9%
3484082 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 47.0 3.49e-01 100.0% 47.0%
3810658 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 49.0 3.41e-01 100.0% 64.7%
3392597 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 38.0 3.06e-01 72.1% 35.6%
4235146 129.1.1.2 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.56 38.0 2.91e-01 70.5% 54.5%
138730 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.56 37.0 3.39e-01 82.0% 48.3%
3536117 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 39.0 2.98e-01 73.8% 31.3%
5046660 304.103.1.5 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › TM1586_NiRdase 0.55 37.0 3.30e-01 70.5% 78.9%
7390 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.55 44.0 2.97e-01 93.4% 79.6%
5014290 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.55 39.0 3.05e-01 75.4% 40.7%
3199763 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.54 41.0 3.32e-01 83.6% 53.6%
4933707 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.54 44.0 3.16e-01 90.2% 75.1%
3260369 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 34.0 3.70e-01 82.0% 84.4%
3475200 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.54 38.0 3.09e-01 77.0% 37.7%
3834352 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.54 42.0 2.56e-01 86.9% 17.5%
3574934 59.1.2.1 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.53 44.0 3.45e-01 90.2% 56.0%
3408090 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 35.0 3.44e-01 72.1% 60.0%
4964178 319.1.1.29 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF7127 0.53 37.0 3.53e-01 78.7% 63.0%
3239098 5.1.1.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › PF27563 0.52 41.0 3.25e-01 91.8% 55.2%
4964214 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.52 34.0 3.60e-01 78.7% 70.9%
3396193 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 38.0 3.07e-01 80.3% 38.5%
4999472 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 45.0 3.18e-01 100.0% 68.4%
None 0.51 42.0 2.66e-01 100.0% 24.0%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 3.64e-01 85.2% 78.7%