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JQ973847.1__AFN39864.1__StauST398-3_0064__00064

Bact-Vir

JQ973847.1__AFN39864.1__StauST398-3_0064__00064

Identity

Accession:
JQ973847 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phietavirus› Staphylococcus_phage_StauST398-3

TaxID: 1195071

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10651.16 best BppU_N 39.8 5.20e-10 100.0% 43.8%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bopB00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 37.0 2.94e-01 83.3% 32.7%
3vtoQ02 6.20.170.10 Special › Other non-globular › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 2 › 0.52 29.0 3.12e-01 95.5% 61.1%
3ky8A01 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.51 35.0 2.70e-01 74.2% 98.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2588815 11.24.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal Ig-like domain in baseplate protein ORF48 › N-terminal Ig-like domain in baseplate protein ORF48 › BppU_N 0.84 76.0 6.12e-01 100.0% 53.7%
4888734 11.24.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal Ig-like domain in baseplate protein ORF48 › N-terminal Ig-like domain in baseplate protein ORF48 › BppU_N 0.81 73.0 5.88e-01 100.0% 52.4%
3172059 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.59 52.0 3.14e-01 100.0% 52.3%
4943895 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.11e-01 100.0% 50.0%
3483501 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 39.0 3.20e-01 83.3% 71.2%
4937416 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.51 40.0 2.77e-01 87.9% 26.1%
D2 high residues 74-135
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dc7A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.85 79.0 5.27e-01 100.0% 29.6%
1yzfA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.84 74.0 5.12e-01 100.0% 30.8%
3rjtA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.82 76.0 5.05e-01 100.0% 29.0%
2hsjD00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.81 74.0 4.98e-01 100.0% 29.0%
3al2A01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.53 39.0 3.10e-01 93.5% 39.8%
1h3mB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 45.0 3.11e-01 100.0% 28.9%
3hnoD02 3.40.50.460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain 0.50 42.0 3.18e-01 100.0% 62.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4380093 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.89 77.0 5.19e-01 100.0% 27.6%
3781946 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.60 37.0 3.66e-01 88.7% 58.5%
3988190 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 47.0 3.06e-01 100.0% 89.6%
3706514 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.54 46.0 2.94e-01 100.0% 19.4%
3922168 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.52 36.0 3.44e-01 85.5% 62.9%
3848681 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.52 34.0 3.43e-01 93.5% 66.2%
3966848 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 41.0 3.12e-01 88.7% 89.0%