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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00050

Bact-Vir

JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00050

Identity

Kingdom:
phage

Quality

61.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-83
PDB
Domain cluster: rep: LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00209__D12-94
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05488.19 best PAAR_motif 29.3 1.00e-06 92.0% 72.9%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jivD00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.84 80.0 7.34e-01 100.0% 82.8%
4ku0D00 2.60.200.60 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.82 77.0 6.98e-01 100.0% 82.3%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 41.0 3.16e-01 88.0% 65.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056459 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.92 72.0 7.72e-01 81.3% 92.3%
3948150 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.90 75.0 7.36e-01 100.0% 82.5%
3949323 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.89 78.0 7.46e-01 100.0% 81.2%
4957571 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.86 81.0 6.54e-01 100.0% 86.9%
3966552 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.85 81.0 7.09e-01 100.0% 77.1%
2631812 3174.3.1.0 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein 0.84 73.0 6.91e-01 100.0% 79.3%
1088866 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.84 80.0 7.34e-01 100.0% 82.8%
4995813 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.83 74.0 6.90e-01 100.0% 78.9%
5059112 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.83 79.0 7.20e-01 100.0% 85.1%
1292784 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.82 77.0 6.98e-01 100.0% 82.3%
3972966 3174.3.1.0 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein 0.81 74.0 5.93e-01 100.0% 89.3%
4890674 3174.3.1.0 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein 0.79 73.0 6.77e-01 100.0% 82.6%
D2 high residues 242-403
PDB
Domain cluster: rep: OQ594355.1__WEV89314.1__H10PHJ05_13__00013__D4-203
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lbuA02 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.76 59.0 6.57e-01 90.1% 100.0%
4nfnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 25.0 3.75e-01 73.5% 98.4%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 32.0 3.58e-01 84.0% 78.3%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 33.0 3.67e-01 88.3% 84.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 28.0 3.59e-01 71.6% 93.5%
3ll7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 42.0 3.99e-01 88.9% 90.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081052 307.1.1.5 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 0.73 60.0 6.33e-01 84.0% 100.0%
3487129 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 29.0 3.76e-01 77.2% 72.2%
4087209 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.62 30.0 3.98e-01 72.8% 87.5%
4029151 320.2.1.0 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain 0.61 22.0 3.61e-01 75.3% 90.0%
3172743 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 33.0 3.94e-01 71.6% 84.0%
3853832 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 31.0 3.83e-01 70.4% 86.3%
4482269 310.1.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.55 35.0 3.96e-01 87.7% 85.0%
3454258 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 27.0 3.57e-01 74.7% 87.1%
3279654 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 34.0 3.73e-01 84.0% 74.1%
4999334 304.165.1.4 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N 0.51 35.0 3.92e-01 74.1% 89.6%
3208474 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 44.0 3.77e-01 95.7% 86.8%