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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00108
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00108
Identity
- Kingdom:
- phage
Quality
95.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-107
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.71 | 48.0 | 4.31e-01 | 70.3% | 52.9% |
| 4ew7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.70 | 53.0 | 4.65e-01 | 97.3% | 54.0% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.68 | 53.0 | 5.18e-01 | 94.6% | 75.9% |
| 3a2eA00 | 3.30.430.20 | Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif | 0.68 | 56.0 | 4.97e-01 | 91.9% | 85.2% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.67 | 53.0 | 4.99e-01 | 94.6% | 70.3% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.64 | 52.0 | 5.00e-01 | 91.9% | 78.6% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.61 | 49.0 | 3.44e-01 | 87.8% | 80.0% |
| 3vx8A02 | 3.40.140.70 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain | 0.61 | 52.0 | 4.15e-01 | 100.0% | 53.0% |
| 3qz4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.61 | 44.0 | 2.86e-01 | 75.7% | 69.3% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.59 | 48.0 | 4.31e-01 | 95.9% | 88.5% |
| 3luqB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 45.0 | 3.97e-01 | 87.8% | 70.2% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.57 | 40.0 | 3.11e-01 | 73.0% | 36.5% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 50.0 | 4.26e-01 | 100.0% | 62.9% |
| 2fs2B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 50.0 | 4.10e-01 | 100.0% | 68.8% |
| 4ae8D00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 50.0 | 3.89e-01 | 100.0% | 58.8% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 46.0 | 3.25e-01 | 91.9% | 76.0% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.13e-01 | 77.0% | 70.1% |
| 1tp6A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.30e-01 | 74.3% | 96.0% |
| 2qkpD00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 47.0 | 3.89e-01 | 94.6% | 57.5% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 47.0 | 3.50e-01 | 100.0% | 61.4% |
| 4k3yC00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 38.0 | 2.48e-01 | 74.3% | 21.7% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 32.0 | 3.44e-01 | 78.4% | 70.0% |
| 4ccvA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 47.0 | 4.02e-01 | 94.6% | 62.6% |
| 3caxA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 45.0 | 3.70e-01 | 93.2% | 53.6% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 45.0 | 4.15e-01 | 91.9% | 84.2% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 44.0 | 3.86e-01 | 94.6% | 72.0% |
| 4bxiA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 42.0 | 3.47e-01 | 89.2% | 66.4% |
| 4i5sA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 44.0 | 4.05e-01 | 93.2% | 77.6% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 46.0 | 3.96e-01 | 100.0% | 62.4% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 41.0 | 3.47e-01 | 86.5% | 90.2% |
| 2bi0A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 45.0 | 3.67e-01 | 100.0% | 73.2% |
| 1njkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 40.0 | 3.44e-01 | 86.5% | 85.0% |
| 4wgkA02 | 2.60.40.2300 | Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain | 0.53 | 40.0 | 3.34e-01 | 82.4% | 97.0% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.52 | 41.0 | 2.84e-01 | 90.5% | 33.4% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 36.0 | 3.48e-01 | 75.7% | 78.7% |
| 5bv3D01 | 3.30.200.40 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain | 0.51 | 43.0 | 3.76e-01 | 93.2% | 87.5% |
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 41.0 | 3.17e-01 | 91.9% | 39.2% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 39.0 | 3.92e-01 | 93.2% | 86.5% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 37.0 | 2.91e-01 | 78.4% | 36.6% |
| 1b9vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.50 | 41.0 | 2.68e-01 | 94.6% | 93.3% |
| 3aimA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 43.0 | 2.95e-01 | 100.0% | 25.4% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 39.0 | 3.47e-01 | 87.8% | 57.0% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.50 | 42.0 | 3.44e-01 | 100.0% | 64.5% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4576687 | 7504.1.1.2 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T | 0.73 | 59.0 | 4.37e-01 | 100.0% | 36.0% |
| 3727689 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.73 | 68.0 | 4.58e-01 | 100.0% | 32.7% |
| 3734714 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.73 | 66.0 | 4.45e-01 | 100.0% | 32.7% |
| 3595541 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.71 | 53.0 | 3.55e-01 | 94.6% | 21.1% |
| 3703112 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 54.0 | 4.53e-01 | 94.6% | 50.0% |
| 3699929 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 53.0 | 4.02e-01 | 94.6% | 35.3% |
| 4959371 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.69 | 51.0 | 4.28e-01 | 93.2% | 46.4% |
| 3274094 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.69 | 45.0 | 3.56e-01 | 93.2% | 32.3% |
| 1866758 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.67 | 53.0 | 4.99e-01 | 94.6% | 70.3% |
| 4299287 | 7504.1.1.2 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T | 0.67 | 53.0 | 4.05e-01 | 100.0% | 36.6% |
| 5042338 | 7504.1.1.2 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T | 0.67 | 51.0 | 4.02e-01 | 100.0% | 39.4% |
| 4010890 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.66 | 56.0 | 4.47e-01 | 93.2% | 62.8% |
| 3984883 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.64 | 50.0 | 4.41e-01 | 93.2% | 55.7% |
| 4980679 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 55.0 | 4.77e-01 | 93.2% | 67.3% |
| 3612153 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 48.0 | 3.45e-01 | 91.9% | 26.7% |
| 3596616 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.63 | 54.0 | 4.48e-01 | 95.9% | 94.1% |
| 3972681 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.63 | 53.0 | 4.92e-01 | 94.6% | 74.5% |
| 3942921 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 52.0 | 3.80e-01 | 94.6% | 58.1% |
| 3978531 | 223.1.1.58 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N | 0.61 | 52.0 | 4.12e-01 | 95.9% | 76.8% |
| 3687000 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.61 | 51.0 | 3.52e-01 | 94.6% | 26.4% |
| 3783089 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.61 | 44.0 | 3.71e-01 | 75.7% | 69.2% |
| 3731400 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 51.0 | 4.20e-01 | 93.2% | 65.2% |
| 2559760 | 216.1.1.5 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › BRE | 0.60 | 43.0 | 3.61e-01 | 74.3% | 49.6% |
| 3718433 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.59 | 43.0 | 3.18e-01 | 75.7% | 45.6% |
| 3196052 | 3887.1.1.0 ↗ | a+b two layers › Yeast killer toxin-like › Yeast killer toxin-like › Yeast killer toxin-like | 0.59 | 49.0 | 4.23e-01 | 94.6% | 83.9% |
| 4951183 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.59 | 48.0 | 4.23e-01 | 93.2% | 68.7% |
| 5002461 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.59 | 47.0 | 4.10e-01 | 90.5% | 65.0% |
| 4955365 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.58 | 50.0 | 4.08e-01 | 94.6% | 55.6% |
| 4959631 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.58 | 47.0 | 3.26e-01 | 91.9% | 30.9% |
| 5019917 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.57 | 48.0 | 3.92e-01 | 93.2% | 56.4% |
| 3942222 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.57 | 48.0 | 4.18e-01 | 93.2% | 63.5% |
| 4558946 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.57 | 41.0 | 3.67e-01 | 78.4% | 86.4% |
| 3187011 | 286.1.1.3 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PrpF | 0.56 | 47.0 | 3.57e-01 | 100.0% | 70.2% |
| 3986460 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.56 | 46.0 | 4.00e-01 | 93.2% | 60.8% |
| 3428134 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.55 | 39.0 | 3.53e-01 | 73.0% | 62.0% |
| 4952182 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 45.0 | 4.02e-01 | 93.2% | 71.8% |
| 4012135 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 39.0 | 2.57e-01 | 75.7% | 24.6% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 37.0 | 3.53e-01 | 82.4% | 58.9% |
| 2719766 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 44.0 | 3.67e-01 | 91.9% | 59.6% |
| 3440523 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.54 | 41.0 | 2.95e-01 | 82.4% | 58.7% |
| 3989572 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.54 | 46.0 | 3.66e-01 | 94.6% | 51.7% |
| 4950605 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 43.0 | 3.76e-01 | 93.2% | 63.2% |
| 5040002 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 45.0 | 3.90e-01 | 94.6% | 62.6% |
| 3973504 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.53 | 35.0 | 2.54e-01 | 70.3% | 33.6% |
| 4963337 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 43.0 | 3.68e-01 | 94.6% | 66.9% |
| 3930021 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 2.84e-01 | 97.3% | 42.4% |
| 4988027 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.52 | 42.0 | 2.94e-01 | 94.6% | 51.2% |
| 4959266 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.52 | 43.0 | 3.00e-01 | 93.2% | 29.4% |
| 3521628 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.51 | 43.0 | 3.63e-01 | 93.2% | 55.2% |
| 3425790 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.51 | 42.0 | 3.90e-01 | 95.9% | 71.6% |
| 5016404 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.51 | 40.0 | 3.92e-01 | 89.2% | 87.5% |
| 4931451 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 39.0 | 3.51e-01 | 93.2% | 57.3% |
| 3565382 | 304.112.1.1 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 | 0.50 | 36.0 | 2.79e-01 | 75.7% | 43.3% |
| 4978072 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.50 | 40.0 | 3.63e-01 | 93.2% | 66.4% |