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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00117
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00117
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-192
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.69 | 64.0 | 6.02e-01 | 100.0% | 94.4% |
| 8agaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 28.0 | 2.78e-01 | 80.8% | 44.4% |
| 7txnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 27.0 | 3.12e-01 | 83.3% | 64.4% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 54.0 | 6.35e-01 | 78.3% | 92.9% |
| 3397473 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 57.0 | 5.75e-01 | 88.3% | 78.3% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.73 | 50.0 | 5.24e-01 | 92.5% | 76.1% |
| 1144783 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 54.0 | 4.83e-01 | 95.8% | 56.9% |
| 3249964 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.72 | 47.0 | 5.71e-01 | 81.7% | 100.0% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.72 | 67.0 | 6.62e-01 | 100.0% | 97.6% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.70 | 48.0 | 5.26e-01 | 82.5% | 86.6% |
| 3879791 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.69 | 60.0 | 4.78e-01 | 91.7% | 86.7% |
| 4100162 | 378.1.1.36 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF29604 | 0.69 | 48.0 | 5.52e-01 | 70.8% | 98.9% |
| 1291965 | 378.1.1.16 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DraIII | 0.69 | 62.0 | 5.13e-01 | 97.5% | 82.7% |
| 3561303 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.69 | 59.0 | 5.25e-01 | 91.7% | 66.1% |
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.69 | 63.0 | 5.98e-01 | 100.0% | 94.4% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 50.0 | 5.06e-01 | 85.0% | 75.4% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.67 | 51.0 | 5.38e-01 | 90.8% | 86.4% |
| 2859872 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.66 | 42.0 | 3.55e-01 | 71.7% | 39.7% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.62 | 54.0 | 5.53e-01 | 92.5% | 97.4% |
| 5000599 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.57 | 45.0 | 3.93e-01 | 84.2% | 66.7% |
| 3762097 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.54 | 37.0 | 4.12e-01 | 70.8% | 90.5% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.53 | 33.0 | 3.46e-01 | 83.3% | 66.4% |
| 3416323 | 376.1.3.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H | 0.52 | 36.0 | 3.84e-01 | 91.7% | 81.0% |
| 4969948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 32.0 | 3.37e-01 | 85.0% | 70.5% |
D2
medium
residues 8-72
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tmaJ00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.71 | 43.0 | 4.57e-01 | 76.9% | 70.2% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 29.0 | 3.68e-01 | 70.8% | 91.2% |
| 1wjpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 28.0 | 3.63e-01 | 73.8% | 96.8% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 36.0 | 3.55e-01 | 70.8% | 88.4% |
| 2epcA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 28.0 | 3.49e-01 | 78.5% | 97.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3431630 | 103.5.1.8 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF1677 | 0.60 | 43.0 | 4.15e-01 | 76.9% | 88.0% |
| 3438405 | 386.1.1.310 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1677 | 0.58 | 44.0 | 4.32e-01 | 80.0% | 88.4% |
| 3322252 | 4952.1.1.3 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › DUF1677 | 0.58 | 41.0 | 4.10e-01 | 76.9% | 75.7% |
| 3658113 | 857.1.1.16 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › DUF1677 | 0.57 | 41.0 | 4.06e-01 | 76.9% | 84.3% |
| 3658922 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.57 | 43.0 | 3.92e-01 | 80.0% | 77.6% |
| 3304548 | 103.1.1.74 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF1677 | 0.57 | 41.0 | 4.09e-01 | 80.0% | 80.0% |
| 3611033 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.56 | 42.0 | 3.53e-01 | 81.5% | 84.3% |
| 3362601 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.54 | 40.0 | 4.04e-01 | 80.0% | 95.4% |
| 3392575 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 30.0 | 3.60e-01 | 84.6% | 100.0% |
| 3450949 | 4207.1.2.63 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › DUF1677 | 0.52 | 45.0 | 3.97e-01 | 100.0% | 88.0% |
| 3451619 | 102.1.1.117 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF1677 | 0.51 | 44.0 | 3.97e-01 | 100.0% | 96.8% |