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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00130
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00130
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-77
Domain cluster:
representative
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jklA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 45.0 | 4.05e-01 | 100.0% | 48.4% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.70 | 52.0 | 4.53e-01 | 100.0% | 51.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.70 | 47.0 | 4.87e-01 | 100.0% | 74.2% |
| 2x3lA01 | 3.90.1150.150 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.70 | 54.0 | 4.71e-01 | 81.7% | 70.5% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.69 | 41.0 | 4.54e-01 | 76.1% | 72.4% |
| 6u7jA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 45.0 | 4.21e-01 | 100.0% | 53.9% |
| 3jqwC00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 42.0 | 3.51e-01 | 100.0% | 36.4% |
| 3fg2P03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.69 | 43.0 | 4.02e-01 | 97.2% | 52.3% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.69 | 50.0 | 4.64e-01 | 77.5% | 100.0% |
| 2j1vA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.69 | 43.0 | 3.41e-01 | 100.0% | 31.9% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.68 | 47.0 | 3.80e-01 | 100.0% | 38.3% |
| 3afgA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 42.0 | 3.76e-01 | 100.0% | 44.1% |
| 3nqhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.67 | 46.0 | 3.65e-01 | 100.0% | 36.8% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 45.0 | 4.16e-01 | 100.0% | 54.3% |
| 2a74A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.66 | 46.0 | 4.04e-01 | 100.0% | 50.5% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.66 | 49.0 | 3.77e-01 | 80.3% | 97.0% |
| 3hn3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 47.0 | 4.09e-01 | 100.0% | 51.0% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 43.0 | 3.95e-01 | 70.4% | 53.8% |
| 3iwaA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 45.0 | 3.14e-01 | 100.0% | 22.4% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.62 | 50.0 | 4.34e-01 | 90.1% | 78.3% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.62 | 55.0 | 3.91e-01 | 100.0% | 84.1% |
| 6fwvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 37.0 | 3.51e-01 | 100.0% | 47.8% |
| 3rq1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 46.0 | 3.64e-01 | 81.7% | 79.1% |
| 3m1cA04 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.60 | 43.0 | 3.49e-01 | 100.0% | 40.9% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.59 | 52.0 | 3.95e-01 | 98.6% | 57.3% |
| 3c6kB03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 41.0 | 3.07e-01 | 73.2% | 95.2% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 39.0 | 3.89e-01 | 97.2% | 66.7% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 42.0 | 4.67e-01 | 90.1% | 100.0% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.59 | 45.0 | 3.72e-01 | 83.1% | 89.1% |
| 8dkuA02 | 2.70.50.60 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain | 0.58 | 43.0 | 3.38e-01 | 100.0% | 38.1% |
| 2hljA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 41.0 | 3.34e-01 | 97.2% | 39.4% |
| 3mc6A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 42.0 | 3.49e-01 | 80.3% | 71.0% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 40.0 | 3.57e-01 | 100.0% | 52.0% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 41.0 | 4.22e-01 | 90.1% | 83.6% |
| 3bgaA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 4.05e-01 | 90.1% | 99.0% |
| 4mveA00 | 2.40.128.580 | Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain | 0.56 | 48.0 | 3.86e-01 | 98.6% | 74.1% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.55 | 39.0 | 3.86e-01 | 94.4% | 71.6% |
| 3fedA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.55 | 47.0 | 3.35e-01 | 97.2% | 98.2% |
| 6d0aA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 46.0 | 3.95e-01 | 94.4% | 74.8% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.54 | 47.0 | 3.30e-01 | 97.2% | 41.9% |
| 5ck3C00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 42.0 | 3.62e-01 | 97.2% | 55.2% |
| 2x5pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 3.77e-01 | 87.3% | 89.4% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 39.0 | 4.14e-01 | 88.7% | 100.0% |
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.53 | 37.0 | 3.36e-01 | 74.6% | 88.5% |
| 5dezA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 45.0 | 4.47e-01 | 95.8% | 98.6% |
| 4ae7A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 3.17e-01 | 90.1% | 53.2% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 48.0 | 3.81e-01 | 100.0% | 58.5% |
| 3rkgA01 | 2.40.128.330 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 45.0 | 4.14e-01 | 98.6% | 86.2% |
| 2pw9C02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 37.0 | 3.88e-01 | 77.5% | 100.0% |
| 4lrzE01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 46.0 | 3.43e-01 | 100.0% | 54.5% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 40.0 | 3.17e-01 | 84.5% | 62.8% |
| 3v67A01 | 3.30.450.210 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain | 0.51 | 35.0 | 2.97e-01 | 71.8% | 94.2% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 41.0 | 3.86e-01 | 93.0% | 75.0% |
| 1t0tV02 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.51 | 44.0 | 3.84e-01 | 100.0% | 89.2% |
| 1loxA01 | 1.20.245.10 | Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 | 0.50 | 41.0 | 2.55e-01 | 90.1% | 74.3% |
| 2fnqA02 | 1.20.245.10 | Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 | 0.50 | 41.0 | 2.52e-01 | 90.1% | 72.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.78 | 48.0 | 5.20e-01 | 100.0% | 73.3% |
| 4188110 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.71 | 54.0 | 5.61e-01 | 88.7% | 87.7% |
| 5076907 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 46.0 | 3.79e-01 | 74.6% | 97.8% |
| 3281830 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.66 | 46.0 | 3.77e-01 | 74.6% | 98.5% |
| 4037081 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.60 | 50.0 | 3.84e-01 | 97.2% | 61.7% |
| 3692189 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 41.0 | 3.43e-01 | 73.2% | 96.3% |
| 4955758 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.59 | 50.0 | 3.44e-01 | 98.6% | 27.4% |
| 4237365 | 223.1.1.61 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 | 0.59 | 40.0 | 3.46e-01 | 73.2% | 83.2% |
| 4010783 | 223.8.1.2 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 | 0.59 | 40.0 | 3.58e-01 | 73.2% | 91.8% |
| 3978824 | 223.8.1.2 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 | 0.57 | 41.0 | 3.02e-01 | 74.6% | 71.8% |
| 4147528 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.57 | 51.0 | 5.14e-01 | 97.2% | 100.0% |
| 3660342 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.56 | 48.0 | 3.04e-01 | 100.0% | 38.8% |
| 3839138 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.56 | 46.0 | 3.07e-01 | 88.7% | 74.6% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 45.0 | 4.21e-01 | 90.1% | 88.6% |
| 4659379 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.54 | 34.0 | 3.50e-01 | 84.5% | 65.7% |
| 5024071 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 39.0 | 3.44e-01 | 80.3% | 100.0% |
| 4481035 | 223.1.1.43 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CusS | 0.54 | 44.0 | 3.43e-01 | 91.5% | 69.1% |
| 4199524 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.53 | 39.0 | 2.78e-01 | 78.9% | 80.0% |
| 3485027 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 40.0 | 2.50e-01 | 88.7% | 74.9% |
| 5020151 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.52 | 46.0 | 3.76e-01 | 98.6% | 51.9% |
| 4680230 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.51 | 42.0 | 3.55e-01 | 100.0% | 53.9% |
| 2105165 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.51 | 42.0 | 4.28e-01 | 91.5% | 100.0% |
| 185588 | 223.1.1.32 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CpxA_peri | 0.51 | 35.0 | 2.92e-01 | 73.2% | 87.9% |
| 3270933 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.51 | 42.0 | 3.52e-01 | 91.5% | 85.6% |
| 3783266 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.51 | 38.0 | 3.15e-01 | 80.3% | 92.0% |
| 3270265 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.50 | 40.0 | 3.23e-01 | 85.9% | 81.5% |