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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00154
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00154
Identity
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-61
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tj7A02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.85 | 53.0 | 3.29e-01 | 86.7% | 13.6% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.82 | 53.0 | 3.97e-01 | 76.7% | 28.2% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.82 | 55.0 | 5.84e-01 | 70.0% | 79.6% |
| 1y02A01 | 1.10.720.140 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.77 | 45.0 | 4.14e-01 | 75.0% | 46.2% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 52.0 | 4.59e-01 | 80.0% | 91.9% |
| 4tzmB00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.68 | 47.0 | 3.12e-01 | 71.7% | 65.6% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.65 | 45.0 | 3.98e-01 | 71.7% | 60.2% |
| 2qg6A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 41.0 | 2.94e-01 | 91.7% | 23.6% |
| 3b6hA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 48.0 | 2.83e-01 | 95.0% | 13.6% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 42.0 | 2.93e-01 | 83.3% | 39.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3666975 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.84 | 56.0 | 4.88e-01 | 75.0% | 48.2% |
| 3573660 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.83 | 56.0 | 4.91e-01 | 75.0% | 49.4% |
| 4941565 | 377.1.1.135 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7685 | 0.81 | 52.0 | 6.18e-01 | 75.0% | 100.0% |
| 3567692 | 376.1.3.85 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Znf_SCAND3 | 0.76 | 54.0 | 5.92e-01 | 75.0% | 94.0% |
| 5033522 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 53.0 | 5.67e-01 | 83.3% | 98.0% |
| 3211971 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 44.0 | 5.05e-01 | 71.7% | 100.0% |
| 3671431 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.67 | 43.0 | 4.69e-01 | 73.3% | 86.7% |
| 3818617 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.66 | 43.0 | 4.47e-01 | 71.7% | 72.7% |
| 5019399 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.64 | 44.0 | 4.62e-01 | 71.7% | 98.2% |
| 4017358 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.57 | 41.0 | 4.17e-01 | 95.0% | 78.3% |