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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00186
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00186
Identity
- Kingdom:
- phage
Quality
71.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 157-205
Domain cluster:
rep: OR354850.1__WNM55287.1__CoNPh27_CDS0021__00021__D7-52
CATH (68)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.86 | 77.0 | 5.41e-01 | 100.0% | 47.3% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.83 | 74.0 | 4.71e-01 | 100.0% | 29.5% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 68.0 | 6.51e-01 | 100.0% | 78.6% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.83 | 73.0 | 5.13e-01 | 100.0% | 47.7% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 69.0 | 6.38e-01 | 100.0% | 74.2% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 70.0 | 7.04e-01 | 100.0% | 94.0% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 73.0 | 6.94e-01 | 100.0% | 84.2% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.81 | 58.0 | 5.35e-01 | 93.9% | 60.7% |
| 6guuA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.80 | 60.0 | 5.82e-01 | 81.6% | 72.2% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.80 | 67.0 | 5.70e-01 | 100.0% | 58.4% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.80 | 69.0 | 4.93e-01 | 100.0% | 50.0% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 71.0 | 6.54e-01 | 100.0% | 80.6% |
| 2z7rA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.79 | 62.0 | 5.15e-01 | 85.7% | 89.3% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 66.0 | 6.29e-01 | 100.0% | 79.3% |
| 1whmA01 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.78 | 68.0 | 6.03e-01 | 100.0% | 94.4% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.78 | 68.0 | 4.87e-01 | 100.0% | 47.6% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 69.0 | 6.07e-01 | 100.0% | 79.2% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 64.0 | 5.68e-01 | 100.0% | 64.8% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.76 | 66.0 | 6.16e-01 | 100.0% | 82.3% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 64.0 | 5.62e-01 | 100.0% | 63.9% |
| 1ne3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 53.0 | 4.80e-01 | 81.6% | 76.5% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 50.0 | 3.82e-01 | 75.5% | 73.3% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 54.0 | 5.52e-01 | 100.0% | 89.4% |
| 2bujB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.70 | 62.0 | 5.01e-01 | 100.0% | 86.2% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.70 | 60.0 | 4.36e-01 | 100.0% | 81.6% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.70 | 60.0 | 4.59e-01 | 100.0% | 77.7% |
| 2qggA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.69 | 61.0 | 5.12e-01 | 100.0% | 62.7% |
| 4i14A02 | 3.40.50.10990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II | 0.69 | 48.0 | 3.55e-01 | 73.5% | 67.5% |
| 1lyvA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.67 | 52.0 | 3.27e-01 | 87.8% | 33.6% |
| 6az1E02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.67 | 48.0 | 4.82e-01 | 77.6% | 92.2% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.66 | 58.0 | 3.53e-01 | 100.0% | 24.2% |
| 5egwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.66 | 55.0 | 3.35e-01 | 100.0% | 20.4% |
| 6cnhA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.66 | 59.0 | 4.98e-01 | 100.0% | 61.3% |
| 3pw3D00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 55.0 | 3.34e-01 | 100.0% | 26.3% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.65 | 48.0 | 3.11e-01 | 81.6% | 19.6% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 51.0 | 4.19e-01 | 100.0% | 56.0% |
| 6krwA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.64 | 49.0 | 3.02e-01 | 85.7% | 43.8% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 54.0 | 4.96e-01 | 100.0% | 77.3% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.63 | 46.0 | 3.21e-01 | 81.6% | 63.9% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 50.0 | 4.80e-01 | 100.0% | 82.5% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.62 | 51.0 | 3.20e-01 | 100.0% | 34.1% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 44.0 | 4.28e-01 | 81.6% | 74.5% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 48.0 | 4.64e-01 | 100.0% | 85.5% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 44.0 | 3.41e-01 | 83.7% | 34.6% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 47.0 | 4.64e-01 | 93.9% | 92.3% |
| 2v90C00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.59 | 45.0 | 3.77e-01 | 87.8% | 65.6% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.58 | 44.0 | 4.30e-01 | 91.8% | 75.4% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.58 | 49.0 | 4.66e-01 | 100.0% | 86.4% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 46.0 | 4.42e-01 | 100.0% | 82.5% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.57 | 46.0 | 4.59e-01 | 93.9% | 92.2% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.57 | 48.0 | 4.53e-01 | 100.0% | 76.6% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 45.0 | 2.94e-01 | 93.9% | 40.4% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 51.0 | 3.08e-01 | 100.0% | 18.4% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.56 | 46.0 | 3.50e-01 | 100.0% | 50.4% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.56 | 43.0 | 3.87e-01 | 95.9% | 81.5% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 49.0 | 4.14e-01 | 100.0% | 62.7% |
| 3r4qA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 44.0 | 3.30e-01 | 91.8% | 78.8% |
| 1uuzB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.55 | 44.0 | 3.46e-01 | 100.0% | 57.8% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.55 | 45.0 | 3.63e-01 | 93.9% | 94.1% |
| 1jsgA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.54 | 45.0 | 3.59e-01 | 98.0% | 79.3% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 42.0 | 3.25e-01 | 87.8% | 90.2% |
| 4n04A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 43.0 | 3.42e-01 | 95.9% | 80.2% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 39.0 | 3.97e-01 | 89.8% | 92.2% |
| 3md7A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 39.0 | 2.48e-01 | 83.7% | 53.7% |
| 4ljzC06 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 42.0 | 3.78e-01 | 93.9% | 89.3% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.52e-01 | 85.7% | 61.6% |
| 1jv2B04 | 4.10.1240.30 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.51 | 40.0 | 3.40e-01 | 89.8% | 52.3% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.50 | 38.0 | 3.18e-01 | 83.7% | 78.0% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507146 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.91 | 81.0 | 6.58e-01 | 100.0% | 55.3% |
| 4931822 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.90 | 70.0 | 6.34e-01 | 100.0% | 63.1% |
| 4049824 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.90 | 77.0 | 5.71e-01 | 100.0% | 40.0% |
| 4029199 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.88 | 81.0 | 4.35e-01 | 100.0% | 7.1% |
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 72.0 | 6.93e-01 | 100.0% | 81.8% |
| 3564972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 75.0 | 6.62e-01 | 100.0% | 67.1% |
| 3399422 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.85 | 72.0 | 5.75e-01 | 100.0% | 48.4% |
| 3935716 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.85 | 77.0 | 6.62e-01 | 100.0% | 66.7% |
| 4501723 | 4.8.1.45 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 | 0.85 | 72.0 | 6.99e-01 | 100.0% | 83.6% |
| 3629536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 74.0 | 5.88e-01 | 100.0% | 50.5% |
| 3491615 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.84 | 75.0 | 4.66e-01 | 100.0% | 19.6% |
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 71.0 | 6.44e-01 | 100.0% | 70.8% |
| 3495447 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.83 | 75.0 | 5.53e-01 | 100.0% | 40.8% |
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 71.0 | 6.83e-01 | 100.0% | 83.6% |
| 3889197 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.83 | 74.0 | 5.04e-01 | 100.0% | 52.9% |
| 3629455 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.83 | 74.0 | 4.88e-01 | 100.0% | 45.3% |
| 4932514 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.82 | 73.0 | 5.43e-01 | 100.0% | 56.7% |
| 3256432 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 70.0 | 6.54e-01 | 100.0% | 78.3% |
| 3824699 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.81 | 73.0 | 6.61e-01 | 100.0% | 76.9% |
| 3302166 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.81 | 73.0 | 6.63e-01 | 100.0% | 76.9% |
| 3770845 | 206.1.1.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase,Pkinase_C | 0.81 | 61.0 | 3.35e-01 | 81.6% | 11.8% |
| 4376886 | 4.1.1.241 ↗ | beta barrels › SH3 › SH3 › SH3 › NifZ | 0.80 | 73.0 | 6.09e-01 | 100.0% | 80.0% |
| 4114383 | 4.8.1.47 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 | 0.80 | 70.0 | 5.88e-01 | 100.0% | 88.2% |
| None | — | 0.80 | 71.0 | 4.84e-01 | 100.0% | 54.1% | |
| 3510024 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.80 | 71.0 | 5.43e-01 | 100.0% | 72.7% |
| 3315471 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.80 | 69.0 | 5.78e-01 | 100.0% | 56.5% |
| 4930846 | 2.1.1.12 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e | 0.80 | 59.0 | 5.55e-01 | 79.6% | 86.7% |
| 4261760 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.80 | 72.0 | 5.71e-01 | 100.0% | 69.5% |
| 4530545 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.80 | 70.0 | 5.63e-01 | 100.0% | 78.9% |
| 3798312 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.80 | 70.0 | 6.26e-01 | 100.0% | 71.4% |
| 4014809 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.79 | 61.0 | 5.57e-01 | 83.7% | 63.1% |
| 5017073 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.79 | 69.0 | 4.79e-01 | 100.0% | 31.3% |
| 3422852 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.79 | 69.0 | 5.14e-01 | 100.0% | 68.8% |
| 3622024 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.79 | 61.0 | 5.69e-01 | 83.7% | 68.3% |
| 3460287 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.79 | 69.0 | 4.79e-01 | 100.0% | 43.1% |
| 4929262 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.78 | 71.0 | 4.89e-01 | 100.0% | 34.8% |
| 3923766 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 69.0 | 5.22e-01 | 100.0% | 65.2% |
| 3521904 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 69.0 | 5.55e-01 | 100.0% | 69.5% |
| 4026274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 69.0 | 4.93e-01 | 100.0% | 37.1% |
| 4023161 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 69.0 | 4.64e-01 | 100.0% | 50.6% |
| 3893440 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.77 | 56.0 | 5.89e-01 | 77.6% | 95.3% |
| 3497989 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 56.0 | 5.26e-01 | 77.6% | 70.0% |
| 3396897 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.77 | 68.0 | 6.30e-01 | 100.0% | 84.1% |
| 3591224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 62.0 | 6.25e-01 | 100.0% | 88.0% |
| 3490245 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 67.0 | 5.53e-01 | 100.0% | 72.2% |
| 4349149 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 69.0 | 5.55e-01 | 100.0% | 78.9% |
| 3582876 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.76 | 65.0 | 5.14e-01 | 100.0% | 47.6% |
| 3411858 | 4.1.1.456 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 | 0.76 | 66.0 | 3.85e-01 | 100.0% | 16.2% |
| 3621303 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 67.0 | 4.89e-01 | 100.0% | 51.5% |
| 4505258 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 60.0 | 4.57e-01 | 89.8% | 47.8% |
| 3501834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 66.0 | 5.51e-01 | 100.0% | 78.8% |
| 3793962 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.75 | 63.0 | 5.29e-01 | 100.0% | 55.6% |
| 3585538 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.75 | 63.0 | 5.12e-01 | 100.0% | 50.0% |
| 3595489 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.75 | 60.0 | 5.59e-01 | 87.8% | 73.3% |
| 3496292 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.74 | 62.0 | 5.99e-01 | 91.8% | 85.5% |
| 3683602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 62.0 | 5.43e-01 | 95.9% | 65.3% |
| 3768347 | 4.1.1.230 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7030 | 0.73 | 65.0 | 5.95e-01 | 100.0% | 81.5% |
| 3461775 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 64.0 | 5.55e-01 | 100.0% | 88.0% |
| 3907176 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.71 | 60.0 | 5.04e-01 | 100.0% | 63.3% |
| 4020093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 3.91e-01 | 83.7% | 65.2% |
| 4642857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 60.0 | 5.22e-01 | 100.0% | 75.0% |
| 3607981 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 63.0 | 5.46e-01 | 100.0% | 73.0% |
| 3236073 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.70 | 58.0 | 5.17e-01 | 100.0% | 69.3% |
| 4040055 | 4.26.1.1 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 | 0.69 | 59.0 | 5.62e-01 | 98.0% | 84.5% |
| 5001148 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.69 | 56.0 | 4.84e-01 | 100.0% | 56.2% |
| 3238955 | 4.1.1.377 ↗ | beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like | 0.69 | 57.0 | 4.98e-01 | 100.0% | 61.3% |
| None | — | 0.68 | 59.0 | 3.59e-01 | 95.9% | 28.5% | |
| 3673865 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.68 | 59.0 | 3.80e-01 | 95.9% | 38.2% |
| 3212772 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.68 | 57.0 | 5.06e-01 | 100.0% | 66.2% |
| 3332736 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.67 | 58.0 | 3.50e-01 | 95.9% | 27.1% |
| 3651207 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.67 | 58.0 | 3.61e-01 | 95.9% | 22.3% |
| 4255495 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.65 | 51.0 | 3.25e-01 | 87.8% | 36.4% |
| 3891882 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 55.0 | 3.47e-01 | 100.0% | 27.7% |
| 3807595 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 54.0 | 3.31e-01 | 100.0% | 22.1% |
| 4960051 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 55.0 | 3.86e-01 | 100.0% | 50.0% |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 4.76e-01 | 100.0% | 69.2% |
| 3319851 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 53.0 | 3.58e-01 | 100.0% | 35.7% |
| 3670468 | 4.1.1.332 ↗ | beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 | 0.63 | 53.0 | 3.99e-01 | 100.0% | 48.5% |
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 4.65e-01 | 100.0% | 70.0% |
| 3287634 | 2003.1.3.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_3 | 0.61 | 53.0 | 3.05e-01 | 100.0% | 18.6% |
| 2557227 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.61 | 52.0 | 4.58e-01 | 100.0% | 64.9% |
| 3805766 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.61 | 46.0 | 4.51e-01 | 100.0% | 78.2% |
| 3974565 | 3794.1.2.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase | 0.59 | 47.0 | 4.35e-01 | 100.0% | 67.7% |
| 4203743 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.59 | 50.0 | 3.67e-01 | 100.0% | 42.8% |
| 1320520 | 243.16.1.1 ↗ | a+b two layers › Cystatin-like › hypothetical protein CLOLEP_02462 › hypothetical protein CLOLEP_02462 › DUF6836 | 0.58 | 42.0 | 3.37e-01 | 77.6% | 91.1% |
| 3994731 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.57 | 46.0 | 3.18e-01 | 95.9% | 25.0% |
| 3614740 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.54 | 44.0 | 3.42e-01 | 100.0% | 38.5% |
| 3433324 | 5.1.3.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 | 0.52 | 43.0 | 2.63e-01 | 100.0% | 25.1% |
| 3282315 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 42.0 | 3.03e-01 | 100.0% | 41.2% |
| 4991059 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 41.0 | 4.17e-01 | 93.9% | 98.0% |
D2
medium
residues 4-51
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.87 | 76.0 | 6.45e-01 | 100.0% | 61.0% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.79 | 56.0 | 4.53e-01 | 75.0% | 40.0% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 60.0 | 4.86e-01 | 81.2% | 55.2% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.72 | 47.0 | 4.50e-01 | 72.9% | 56.1% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.71 | 61.0 | 5.00e-01 | 100.0% | 65.9% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.70 | 48.0 | 4.09e-01 | 100.0% | 43.2% |
| 1d9cA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 47.0 | 3.43e-01 | 72.9% | 37.2% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 58.0 | 4.09e-01 | 95.8% | 37.0% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 54.0 | 4.97e-01 | 95.8% | 71.4% |
| 7caqA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.64 | 54.0 | 3.61e-01 | 97.9% | 90.5% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 47.0 | 4.06e-01 | 85.4% | 82.9% |
| 2jgpA03 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.62 | 52.0 | 3.38e-01 | 97.9% | 76.4% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.55 | 45.0 | 3.95e-01 | 100.0% | 60.8% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.54 | 46.0 | 3.62e-01 | 100.0% | 88.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3114 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.87 | 76.0 | 6.54e-01 | 100.0% | 63.5% |
| 5078708 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.80 | 61.0 | 5.16e-01 | 81.2% | 66.7% |
| 4991597 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.79 | 67.0 | 4.31e-01 | 100.0% | 20.4% |
| 5064861 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.77 | 67.0 | 4.24e-01 | 100.0% | 20.0% |
| 3726362 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 63.0 | 5.09e-01 | 91.7% | 56.7% |
| 5057411 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.76 | 67.0 | 5.67e-01 | 100.0% | 62.5% |
| 5074724 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.75 | 59.0 | 4.94e-01 | 100.0% | 48.9% |
| 4402227 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.74 | 65.0 | 6.47e-01 | 100.0% | 100.0% |
| 4388170 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.72 | 56.0 | 5.36e-01 | 100.0% | 73.3% |
| 362788 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.72 | 56.0 | 5.66e-01 | 100.0% | 89.6% |
| 4123695 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 56.0 | 5.06e-01 | 100.0% | 62.9% |
| 3519990 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.71 | 61.0 | 4.05e-01 | 95.8% | 76.4% |
| 3957775 | 210.2.1.2 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE | 0.71 | 58.0 | 3.71e-01 | 95.8% | 19.1% |
| 3289310 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.71 | 54.0 | 5.15e-01 | 85.4% | 70.9% |
| 4648382 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.71 | 61.0 | 4.17e-01 | 97.9% | 30.3% |
| 4504086 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.70 | 60.0 | 5.52e-01 | 100.0% | 75.4% |
| 5046406 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 57.0 | 3.70e-01 | 100.0% | 20.8% |
| 4501680 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.69 | 59.0 | 4.11e-01 | 97.9% | 31.4% |
| 4070908 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.69 | 59.0 | 4.16e-01 | 97.9% | 32.6% |
| 5005136 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.69 | 60.0 | 4.04e-01 | 97.9% | 40.6% |
| 5059280 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.68 | 46.0 | 4.28e-01 | 70.8% | 91.7% |
| 5070510 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.68 | 48.0 | 4.03e-01 | 75.0% | 70.0% |
| 4096174 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.66 | 53.0 | 4.45e-01 | 97.9% | 57.4% |
| 3687318 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 52.0 | 4.36e-01 | 95.8% | 90.5% |
| 5057202 | 101.1.3.8 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r4_2 | 0.65 | 53.0 | 4.66e-01 | 95.8% | 61.4% |
| 5060559 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.64 | 44.0 | 4.14e-01 | 72.9% | 93.3% |
| 4015710 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 56.0 | 4.67e-01 | 100.0% | 61.2% |
| 4097525 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.63 | 56.0 | 3.87e-01 | 97.9% | 32.0% |
| 3495812 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.57 | 45.0 | 4.42e-01 | 100.0% | 87.3% |
| 4990053 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.53 | 45.0 | 4.01e-01 | 100.0% | 65.7% |
| 5060141 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 44.0 | 3.97e-01 | 100.0% | 73.9% |