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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00293
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00293
Identity
- Kingdom:
- phage
Quality
73.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-69
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4is7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.70 | 36.0 | 3.50e-01 | 70.3% | 44.4% |
| 1am7A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.62 | 51.0 | 3.94e-01 | 93.8% | 81.8% |
| 1lyvA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 52.0 | 3.39e-01 | 93.8% | 89.4% |
| 7r0kA01 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.61 | 49.0 | 4.13e-01 | 87.5% | 95.4% |
| 7rsfA01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 47.0 | 3.80e-01 | 84.4% | 62.0% |
| 4l9mA03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 41.0 | 3.92e-01 | 76.6% | 84.2% |
| 7tjbA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 44.0 | 3.25e-01 | 98.4% | 77.2% |
| 1w5sA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 33.0 | 2.93e-01 | 81.2% | 38.8% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 38.0 | 3.90e-01 | 79.7% | 88.5% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.51 | 43.0 | 3.84e-01 | 96.9% | 82.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3063719 | 5040.1.1.3 ↗ | extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › FixP_N | 0.52 | 38.0 | 3.32e-01 | 79.7% | 77.5% |
| 3858699 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.52 | 42.0 | 3.70e-01 | 98.4% | 59.0% |
| 3874601 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.50 | 43.0 | 3.64e-01 | 96.9% | 69.1% |