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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00307
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00307
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-81
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.67 | 56.0 | 4.79e-01 | 93.3% | 61.2% |
| 2eucA00 | 1.10.8.570 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB | 0.66 | 45.0 | 4.02e-01 | 70.7% | 74.8% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.63 | 36.0 | 3.96e-01 | 88.0% | 70.5% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.62 | 53.0 | 4.16e-01 | 94.7% | 65.6% |
| 3pvuA02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.60 | 50.0 | 4.96e-01 | 94.7% | 97.5% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.60 | 52.0 | 4.56e-01 | 100.0% | 95.7% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 43.0 | 3.67e-01 | 74.7% | 66.7% |
| 2rsvA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 47.0 | 3.04e-01 | 89.3% | 44.2% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.57 | 46.0 | 3.89e-01 | 89.3% | 85.3% |
| 1oksA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 37.0 | 4.23e-01 | 73.3% | 96.2% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 45.0 | 3.61e-01 | 88.0% | 94.7% |
| 4nqwB00 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.56 | 33.0 | 3.41e-01 | 76.0% | 60.3% |
| 3bvxA02 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.56 | 41.0 | 3.75e-01 | 81.3% | 87.4% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 39.0 | 2.74e-01 | 73.3% | 82.8% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.54 | 39.0 | 4.09e-01 | 76.0% | 87.9% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.53 | 37.0 | 3.55e-01 | 100.0% | 64.0% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.51 | 43.0 | 3.91e-01 | 100.0% | 90.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225374 | 601.1.2.6 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B | 0.71 | 57.0 | 4.93e-01 | 89.3% | 85.8% |
| 3651732 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.63 | 43.0 | 2.94e-01 | 70.7% | 25.6% |
| 3533062 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.58 | 41.0 | 3.89e-01 | 76.0% | 69.5% |
| 3297949 | 592.7.1.2 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › PWI | 0.58 | 32.0 | 3.38e-01 | 88.0% | 60.0% |
| 5020941 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.57 | 45.0 | 3.87e-01 | 89.3% | 78.5% |
| 3300095 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.57 | 31.0 | 3.34e-01 | 85.3% | 60.0% |
| 4935513 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.56 | 44.0 | 3.77e-01 | 88.0% | 80.8% |
| 5020140 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.56 | 44.0 | 3.60e-01 | 89.3% | 67.1% |
| 4944303 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.56 | 44.0 | 3.85e-01 | 89.3% | 84.0% |
| 4075540 | 4067.1.1.0 ↗ | alpha bundles › FdhE-like › FdhE-like › FdhE-like | 0.56 | 41.0 | 3.50e-01 | 78.7% | 66.4% |
| 3924925 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 40.0 | 3.52e-01 | 77.3% | 85.2% |
| 5054121 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.55 | 44.0 | 3.99e-01 | 93.3% | 84.5% |
| 4928682 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.54 | 44.0 | 3.83e-01 | 93.3% | 84.0% |
| 3325143 | 632.2.1.26 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › PF31066 | 0.54 | 42.0 | 3.81e-01 | 88.0% | 82.7% |
| 5021741 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.54 | 35.0 | 3.61e-01 | 96.0% | 70.0% |
| 3518047 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 38.0 | 3.50e-01 | 88.0% | 57.9% |
| 5061313 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.53 | 42.0 | 3.65e-01 | 89.3% | 84.0% |
| 5007693 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 42.0 | 3.81e-01 | 93.3% | 90.4% |
| 5066094 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 42.0 | 3.58e-01 | 88.0% | 88.0% |
| 3851417 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.52 | 38.0 | 3.56e-01 | 78.7% | 82.7% |
| 3493493 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.52 | 37.0 | 3.26e-01 | 88.0% | 50.9% |
| 2627770 | 101.1.4.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou | 0.52 | 36.0 | 3.74e-01 | 74.7% | 98.5% |
| 5003411 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.51 | 41.0 | 3.45e-01 | 94.7% | 69.3% |
| 4932272 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.51 | 41.0 | 3.49e-01 | 94.7% | 75.0% |
| 4015915 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.51 | 30.0 | 2.95e-01 | 86.7% | 53.8% |
| 3285714 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.51 | 40.0 | 3.48e-01 | 88.0% | 58.1% |
| 3690980 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.51 | 41.0 | 3.81e-01 | 96.0% | 87.6% |
| 3650120 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 36.0 | 2.55e-01 | 96.0% | 21.1% |