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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00320
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00320
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-81
Domain cluster:
rep: NC_061451.1__YP_010303461.1__MPK74_gp320__00320__D12-90
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cyuA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.65 | 48.0 | 3.89e-01 | 79.7% | 83.8% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.63 | 49.0 | 4.60e-01 | 83.5% | 100.0% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 41.0 | 3.67e-01 | 78.5% | 49.1% |
| 2y24A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 36.0 | 3.24e-01 | 73.4% | 42.1% |
| 3fw6A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 36.0 | 3.18e-01 | 75.9% | 39.3% |
| 1nc7A00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.60 | 38.0 | 3.36e-01 | 74.7% | 44.8% |
| 6kxkG01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.59 | 44.0 | 3.83e-01 | 100.0% | 49.6% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.58 | 40.0 | 4.06e-01 | 72.2% | 100.0% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.58 | 38.0 | 4.10e-01 | 77.2% | 82.5% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.58 | 37.0 | 3.42e-01 | 77.2% | 47.7% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.57 | 40.0 | 3.11e-01 | 73.4% | 89.6% |
| 3mcnA01 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.57 | 41.0 | 3.41e-01 | 77.2% | 61.9% |
| 3omzA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 3.62e-01 | 72.2% | 66.0% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.56 | 45.0 | 4.28e-01 | 92.4% | 92.9% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 42.0 | 3.99e-01 | 87.3% | 66.7% |
| 2ii7H00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.56 | 39.0 | 3.53e-01 | 74.7% | 53.8% |
| 3tw6C01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 41.0 | 2.61e-01 | 79.7% | 78.4% |
| 1js8B02 | 2.60.310.10 | Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain | 0.56 | 40.0 | 3.70e-01 | 77.2% | 94.3% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 40.0 | 3.18e-01 | 77.2% | 52.5% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 42.0 | 3.29e-01 | 82.3% | 78.8% |
| 4wsfA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 39.0 | 3.54e-01 | 74.7% | 76.6% |
| 4fixA01 | 3.90.550.60 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.55 | 38.0 | 2.43e-01 | 75.9% | 14.1% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 43.0 | 4.45e-01 | 92.4% | 92.1% |
| 1etb200 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.55 | 37.0 | 3.32e-01 | 79.7% | 47.9% |
| 1dv2A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 40.0 | 2.79e-01 | 79.7% | 95.1% |
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.53 | 33.0 | 3.03e-01 | 78.5% | 41.9% |
| 7ui8A01 | 2.60.40.3930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 38.0 | 3.50e-01 | 74.7% | 59.8% |
| 3omzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.67e-01 | 81.0% | 65.7% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 38.0 | 3.12e-01 | 75.9% | 65.1% |
| 4mz2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.44e-01 | 77.2% | 64.9% |
| 2kd7A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 34.0 | 2.73e-01 | 75.9% | 32.7% |
| 2ipiA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.52 | 45.0 | 3.25e-01 | 100.0% | 74.6% |
| 3o4lD01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.42e-01 | 74.7% | 64.4% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 44.0 | 4.16e-01 | 98.7% | 98.0% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 40.0 | 2.93e-01 | 88.6% | 89.6% |
| 6a6yA00 | 2.60.40.1490 | Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like | 0.51 | 36.0 | 2.96e-01 | 75.9% | 42.8% |
| 4oq8A00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.51 | 35.0 | 2.95e-01 | 73.4% | 40.3% |
| 4zchA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 36.0 | 3.14e-01 | 77.2% | 66.2% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.50 | 39.0 | 3.04e-01 | 92.4% | 89.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2568333 | 11.1.1.237 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 | 0.62 | 41.0 | 3.68e-01 | 78.5% | 48.7% |
| 3975133 | 11.1.1.210 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZirS_C | 0.61 | 39.0 | 3.34e-01 | 81.0% | 39.2% |
| 3232211 | 11.2.1.58 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF26186 | 0.60 | 44.0 | 3.31e-01 | 78.5% | 77.6% |
| 5062851 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 38.0 | 3.62e-01 | 74.7% | 53.7% |
| 4121299 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.59 | 51.0 | 3.69e-01 | 98.7% | 66.3% |
| 3390426 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.58 | 44.0 | 4.09e-01 | 81.0% | 87.0% |
| 4175430 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.58 | 50.0 | 3.63e-01 | 100.0% | 67.1% |
| 5062783 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 38.0 | 3.52e-01 | 75.9% | 54.3% |
| 4033537 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.55 | 47.0 | 3.47e-01 | 98.7% | 63.9% |
| 3842576 | 220.1.1.67 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 | 0.55 | 39.0 | 3.43e-01 | 74.7% | 70.0% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 38.0 | 4.15e-01 | 78.5% | 98.3% |
| 4458952 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.54 | 38.0 | 3.23e-01 | 73.4% | 69.7% |
| 3607549 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 38.0 | 2.91e-01 | 77.2% | 99.6% |
| 4942296 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.54 | 38.0 | 3.49e-01 | 75.9% | 55.2% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 43.0 | 4.01e-01 | 93.7% | 70.3% |
| 2512518 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.54 | 42.0 | 3.99e-01 | 92.4% | 70.3% |
| 5037161 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 3.60e-01 | 81.0% | 55.7% |
| 1121 | 10.32.1.35 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YpM | 0.53 | 33.0 | 3.03e-01 | 78.5% | 41.9% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.52 | 37.0 | 4.06e-01 | 75.9% | 100.0% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.52 | 42.0 | 4.32e-01 | 93.7% | 98.7% |
| 3294524 | 2492.1.1.6 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin | 0.52 | 40.0 | 2.64e-01 | 87.3% | 70.1% |
| 3618629 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 39.0 | 3.30e-01 | 86.1% | 90.0% |
| 3927298 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 34.0 | 2.82e-01 | 73.4% | 37.3% |
| 3999262 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 36.0 | 3.62e-01 | 82.3% | 72.9% |
| 3873369 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.50 | 35.0 | 3.40e-01 | 73.4% | 73.3% |
| 3496218 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 35.0 | 2.67e-01 | 75.9% | 47.9% |