←Back to structures
JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00359
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00359
Identity
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-100
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00063__D6-101
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.64 | 31.0 | 3.02e-01 | 100.0% | 41.3% |
| 3d7rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 42.0 | 3.03e-01 | 71.1% | 67.9% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.60 | 31.0 | 4.20e-01 | 91.8% | 100.0% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 27.0 | 3.24e-01 | 80.4% | 63.1% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 39.0 | 2.81e-01 | 74.2% | 76.2% |
| 2yk0A03 | 1.20.58.1930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 48.0 | 3.70e-01 | 100.0% | 48.0% |
| 1j0wB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 31.0 | 3.03e-01 | 100.0% | 52.4% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 41.0 | 4.32e-01 | 88.7% | 96.5% |
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.51 | 45.0 | 4.37e-01 | 100.0% | 86.9% |
| 4k3bA04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 34.0 | 3.71e-01 | 85.6% | 83.3% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.50 | 44.0 | 3.59e-01 | 99.0% | 77.6% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.50 | 34.0 | 2.89e-01 | 70.1% | 74.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596335 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 47.0 | 2.90e-01 | 76.3% | 20.7% |
| 3896408 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.63 | 57.0 | 4.13e-01 | 100.0% | 80.4% |
| 3873279 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.62 | 57.0 | 4.07e-01 | 100.0% | 78.6% |
| 3482756 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.62 | 55.0 | 4.08e-01 | 99.0% | 61.2% |
| 3929069 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.61 | 56.0 | 4.25e-01 | 100.0% | 67.7% |
| 3276573 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.61 | 55.0 | 4.03e-01 | 100.0% | 82.6% |
| 3777032 | 5054.1.1.11 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › SK_channel | 0.60 | 55.0 | 4.21e-01 | 100.0% | 68.6% |
| 3856045 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.60 | 54.0 | 3.88e-01 | 100.0% | 72.4% |
| 4997100 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.60 | 53.0 | 3.85e-01 | 100.0% | 49.5% |
| 3605494 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 36.0 | 3.43e-01 | 100.0% | 51.3% |
| 3174376 | 109.4.1.3127 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31194 | 0.58 | 41.0 | 2.71e-01 | 73.2% | 54.6% |
| 3649913 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.58 | 52.0 | 4.32e-01 | 100.0% | 81.8% |
| 4318870 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.58 | 50.0 | 3.34e-01 | 95.9% | 45.3% |
| 5040520 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.58 | 51.0 | 3.41e-01 | 99.0% | 43.8% |
| 3483369 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.58 | 39.0 | 2.76e-01 | 100.0% | 23.6% |
| 4307474 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.57 | 51.0 | 3.25e-01 | 99.0% | 40.6% |
| 3455742 | 284.2.1.2 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › DUF8223 | 0.57 | 27.0 | 3.14e-01 | 72.2% | 61.5% |
| 4999808 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.57 | 50.0 | 3.73e-01 | 100.0% | 83.1% |
| 3164345 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.56 | 49.0 | 3.33e-01 | 99.0% | 49.0% |
| 3880867 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.56 | 49.0 | 3.31e-01 | 99.0% | 93.3% |
| 4964022 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.56 | 49.0 | 3.00e-01 | 100.0% | 56.9% |
| 4004118 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.55 | 39.0 | 3.16e-01 | 74.2% | 56.2% |
| 3494073 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.55 | 48.0 | 2.98e-01 | 100.0% | 38.4% |
| 3791945 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.54 | 48.0 | 3.69e-01 | 100.0% | 63.6% |
| 2337287 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.54 | 47.0 | 3.14e-01 | 99.0% | 47.3% |
| 3494833 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 47.0 | 3.09e-01 | 100.0% | 74.0% |
| 3386682 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.54 | 46.0 | 3.17e-01 | 99.0% | 73.5% |
| 3711985 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.53 | 47.0 | 3.55e-01 | 100.0% | 42.8% |
| 5005387 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 45.0 | 3.44e-01 | 95.9% | 58.8% |
| 2429487 | 3281.1.1.2 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N | 0.53 | 47.0 | 2.90e-01 | 100.0% | 32.0% |
| 3169451 | 109.4.1.3193 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, Suf, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N | 0.53 | 38.0 | 2.29e-01 | 75.3% | 15.2% |
| 3912477 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.52 | 46.0 | 3.25e-01 | 100.0% | 68.8% |
| 3169722 | 109.4.1.298 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel | 0.52 | 39.0 | 2.87e-01 | 81.4% | 68.6% |
| 4989412 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 44.0 | 3.43e-01 | 100.0% | 60.0% |