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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00394
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00394
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-70
Domain cluster:
rep: ON758385.1__USV41040.1__X__00214__D13-76
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.78 | 66.0 | 5.51e-01 | 100.0% | 54.7% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 39.0 | 4.13e-01 | 96.8% | 78.2% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 45.0 | 3.10e-01 | 93.7% | 91.8% |
| 2x8nA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.58 | 43.0 | 3.71e-01 | 79.4% | 61.9% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 42.0 | 3.68e-01 | 79.4% | 90.0% |
| 3luuA00 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.57 | 44.0 | 3.95e-01 | 84.1% | 70.8% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.56 | 41.0 | 4.08e-01 | 81.0% | 83.8% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.99e-01 | 100.0% | 100.0% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.54 | 43.0 | 3.58e-01 | 90.5% | 64.7% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 40.0 | 4.11e-01 | 79.4% | 86.2% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 37.0 | 3.87e-01 | 73.0% | 84.5% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.89e-01 | 96.8% | 38.4% |
| 2wg5F02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 33.0 | 3.39e-01 | 90.5% | 65.5% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.53 | 41.0 | 3.42e-01 | 85.7% | 87.9% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 39.0 | 3.35e-01 | 81.0% | 82.4% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.60e-01 | 81.0% | 64.9% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.53 | 41.0 | 3.70e-01 | 87.3% | 70.7% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 37.0 | 3.50e-01 | 76.2% | 87.5% |
| 2v05A02 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.52 | 37.0 | 2.78e-01 | 74.6% | 46.2% |
| 4fd0A01 | 2.60.40.3630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.70e-01 | 85.7% | 92.4% |
| 5umbA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 44.0 | 3.24e-01 | 100.0% | 45.9% |
| 4rqyA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 38.0 | 3.04e-01 | 77.8% | 75.6% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 32.0 | 3.50e-01 | 93.7% | 83.3% |
| 1l1jA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 35.0 | 2.86e-01 | 71.4% | 85.6% |
| 6y48D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 2.67e-01 | 90.5% | 62.8% |
| 3gkeA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 39.0 | 3.18e-01 | 88.9% | 44.6% |
| 1r8oB01 | 2.30.30.480 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 38.0 | 3.78e-01 | 90.5% | 75.8% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 36.0 | 3.65e-01 | 77.8% | 93.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967584 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.61 | 47.0 | 4.40e-01 | 85.7% | 97.5% |
| 3930660 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.60 | 46.0 | 4.07e-01 | 85.7% | 82.7% |
| 3579362 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.60 | 44.0 | 3.73e-01 | 81.0% | 90.9% |
| 3217960 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.58 | 44.0 | 3.80e-01 | 84.1% | 81.0% |
| 3987255 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.58 | 41.0 | 2.73e-01 | 74.6% | 31.0% |
| 3622767 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 42.0 | 3.78e-01 | 82.5% | 92.6% |
| 3212468 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 42.0 | 3.71e-01 | 82.5% | 85.0% |
| 3277860 | 4.1.1.368 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3097_N | 0.56 | 44.0 | 4.36e-01 | 85.7% | 89.2% |
| 3665681 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.56 | 42.0 | 2.55e-01 | 81.0% | 67.1% |
| 3811678 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 41.0 | 3.48e-01 | 79.4% | 77.8% |
| 3971397 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.56 | 42.0 | 3.77e-01 | 84.1% | 76.3% |
| 4032337 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.55 | 42.0 | 3.10e-01 | 82.5% | 38.2% |
| 3599678 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 40.0 | 2.27e-01 | 81.0% | 47.9% |
| 1106822 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.55 | 44.0 | 3.20e-01 | 100.0% | 85.5% |
| 3902395 | 4138.1.1.1 ↗ | few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat › Granulin | 0.54 | 34.0 | 3.29e-01 | 90.5% | 54.7% |
| 3979962 | 9.1.1.69 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BigA_N | 0.54 | 39.0 | 3.58e-01 | 77.8% | 97.6% |
| 3454406 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.54 | 38.0 | 4.09e-01 | 100.0% | 94.0% |
| 3639760 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.53 | 36.0 | 2.73e-01 | 73.0% | 50.6% |
| 3532309 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.53 | 35.0 | 3.59e-01 | 100.0% | 70.0% |
| 3940255 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.52 | 41.0 | 2.82e-01 | 85.7% | 57.3% |
| 4002724 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.52 | 39.0 | 2.38e-01 | 79.4% | 35.1% |
| 3585538 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.52 | 38.0 | 3.36e-01 | 100.0% | 51.0% |
| 6330 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.52 | 37.0 | 2.99e-01 | 77.8% | 78.3% |
| 3589823 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 35.0 | 3.54e-01 | 73.0% | 75.4% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.51 | 45.0 | 2.77e-01 | 100.0% | 20.0% |
| 3664655 | 601.28.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon | 0.51 | 41.0 | 3.26e-01 | 100.0% | 40.0% |
| 3392130 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.51 | 37.0 | 3.67e-01 | 100.0% | 75.4% |
| 3600524 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 43.0 | 2.53e-01 | 90.5% | 13.7% |
| 3433009 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.51 | 41.0 | 2.82e-01 | 90.5% | 93.7% |
| 3769507 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.51 | 36.0 | 3.52e-01 | 76.2% | 77.1% |
| 3622645 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.51 | 39.0 | 3.47e-01 | 96.8% | 56.8% |
| 3699639 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 41.0 | 2.83e-01 | 100.0% | 67.6% |
| 4027091 | 375.3.1.2 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL | 0.50 | 37.0 | 3.89e-01 | 79.4% | 89.1% |
| 3185909 | 394.1.1.2 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_19 | 0.50 | 35.0 | 3.88e-01 | 82.5% | 92.0% |