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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00422
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00422
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-67
D2
high
residues 72-166
Domain cluster:
rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 32.7 | 1.20e-07 | 95.8% | 87.8% |
| PF13455.13 | MUG113 | 22.1 | 2.50e-04 | 76.8% | 89.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ir6A02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.71 | 48.0 | 4.31e-01 | 96.8% | 51.2% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.65 | 36.0 | 4.45e-01 | 100.0% | 100.0% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.59 | 39.0 | 4.15e-01 | 97.9% | 76.8% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 36.0 | 3.64e-01 | 92.6% | 68.8% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.98e-01 | 85.3% | 87.2% |
| 4ev0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 4.01e-01 | 90.5% | 90.9% |
| 2gauA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 4.20e-01 | 90.5% | 95.1% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 4.24e-01 | 93.7% | 95.2% |
| 1xmxA03 | 1.10.10.680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) | 0.51 | 35.0 | 3.64e-01 | 91.6% | 75.3% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.51 | 44.0 | 3.95e-01 | 94.7% | 90.3% |
| 3d0sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 4.08e-01 | 90.5% | 95.0% |
| 3dkwG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.87e-01 | 89.5% | 88.9% |
| 1rv9A00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.50 | 38.0 | 2.85e-01 | 80.0% | 57.4% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.50 | 38.0 | 3.94e-01 | 77.9% | 97.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989300 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.83 | 75.0 | 7.10e-01 | 95.8% | 94.5% |
| 3689357 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.82 | 77.0 | 6.27e-01 | 100.0% | 66.1% |
| 4016088 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.79 | 73.0 | 7.05e-01 | 98.9% | 99.0% |
| 4160981 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.74 | 69.0 | 5.24e-01 | 100.0% | 60.0% |
| 4138617 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.73 | 68.0 | 5.19e-01 | 100.0% | 51.7% |
| 4971513 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.66 | 44.0 | 4.93e-01 | 87.4% | 92.9% |
| 5010603 | 101.1.9.75 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 | 0.62 | 37.0 | 4.38e-01 | 93.7% | 91.7% |
| 4954582 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.62 | 41.0 | 3.71e-01 | 88.4% | 48.1% |
| 4519317 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.61 | 37.0 | 3.95e-01 | 82.1% | 68.2% |
| 5022487 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 36.0 | 4.37e-01 | 82.1% | 100.0% |
| 3788003 | 220.1.1.112 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 | 0.58 | 34.0 | 2.98e-01 | 100.0% | 37.9% |
| 5046209 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 47.0 | 4.92e-01 | 96.8% | 97.6% |
| 4996337 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 35.0 | 4.14e-01 | 80.0% | 96.7% |
| 4270095 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.54 | 34.0 | 3.76e-01 | 86.3% | 84.3% |
| 3786945 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.54 | 40.0 | 4.02e-01 | 77.9% | 90.5% |
| 3165017 | 101.1.2.142 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 | 0.54 | 40.0 | 4.10e-01 | 89.5% | 84.4% |
| 4825869 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.53 | 42.0 | 3.47e-01 | 100.0% | 47.3% |
| 4358359 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.53 | 39.0 | 3.87e-01 | 78.9% | 85.0% |
| 4932848 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.53 | 31.0 | 3.21e-01 | 82.1% | 59.1% |
| 4468424 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.52 | 39.0 | 4.05e-01 | 78.9% | 88.2% |
| 4633704 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.52 | 39.0 | 4.01e-01 | 77.9% | 95.6% |
| 4991791 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 4.34e-01 | 92.6% | 96.8% |
| 5045964 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.51 | 39.0 | 3.00e-01 | 100.0% | 34.7% |
| 3486002 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.51 | 39.0 | 3.91e-01 | 80.0% | 94.7% |
| 4174474 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.51 | 38.0 | 3.94e-01 | 78.9% | 96.7% |
| 7917 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.50 | 38.0 | 2.85e-01 | 80.0% | 57.4% |
| 4289852 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.50 | 37.0 | 3.91e-01 | 77.9% | 100.0% |