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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00487

Bact-Vir

JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00487

Identity

Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-102
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 31.0 4.16e-01 82.0% 82.0%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.65 42.0 4.75e-01 100.0% 89.0%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.64 35.0 4.32e-01 100.0% 85.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 30.0 4.01e-01 82.0% 89.6%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 32.0 4.31e-01 92.0% 96.0%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 42.0 4.42e-01 100.0% 79.5%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.61 33.0 3.87e-01 83.0% 77.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 3.55e-01 82.0% 72.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 4.60e-01 99.0% 88.5%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.58 42.0 4.19e-01 96.0% 74.3%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 31.0 3.93e-01 90.0% 98.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 31.0 3.86e-01 79.0% 96.4%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 4.12e-01 98.0% 81.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.63e-01 90.0% 83.8%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 28.0 3.61e-01 79.0% 91.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.76e-01 96.0% 89.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.67e-01 81.0% 98.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.95e-01 98.0% 69.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.65e-01 91.0% 93.5%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 28.0 3.31e-01 93.0% 78.8%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 44.0 3.60e-01 96.0% 79.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4153553 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 29.0 4.39e-01 93.0% 84.4%
5009635 3534.1.1.5 ↗ beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF1854 0.69 49.0 5.58e-01 100.0% 97.3%
3208784 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.69 47.0 4.00e-01 70.0% 66.9%
4974740 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 4.00e-01 99.0% 61.0%
4208229 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 31.0 4.10e-01 79.0% 100.0%
4587235 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.59 48.0 4.62e-01 100.0% 76.5%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 33.0 4.07e-01 92.0% 98.2%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 33.0 3.58e-01 83.0% 67.5%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 32.0 3.65e-01 70.0% 75.7%
4034521 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.57 41.0 4.18e-01 100.0% 77.0%
2596548 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.56 34.0 3.85e-01 85.0% 84.3%
3939881 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 33.0 3.66e-01 100.0% 74.7%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 31.0 3.79e-01 78.0% 90.0%
3737927 220.1.1.294 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.55 39.0 3.80e-01 100.0% 66.4%
3648305 809.2.1.7 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › Beta-prop_IP5PC_F 0.54 32.0 3.34e-01 97.0% 61.1%
3926363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.47e-01 94.0% 80.9%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.92e-01 100.0% 70.0%
3939076 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 42.0 4.30e-01 94.0% 86.0%
3246255 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 29.0 3.33e-01 83.0% 75.7%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 29.0 3.63e-01 76.0% 98.2%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 29.0 3.54e-01 92.0% 96.4%
3608374 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.74e-01 82.0% 98.8%
4023242 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.51 36.0 3.42e-01 95.0% 60.0%
3276072 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.50 40.0 4.01e-01 92.0% 81.9%