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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00510
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00510
Identity
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-123
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 74.0 | 6.62e-01 | 100.0% | 70.6% |
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.74 | 43.0 | 3.44e-01 | 71.4% | 28.9% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.70 | 43.0 | 3.80e-01 | 75.5% | 41.1% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 47.0 | 4.87e-01 | 71.4% | 93.6% |
| 2xi8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 56.0 | 5.08e-01 | 95.9% | 83.3% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.63 | 48.0 | 4.16e-01 | 81.6% | 67.1% |
| 1a6jB00 | 3.40.930.10 | Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A | 0.63 | 46.0 | 3.24e-01 | 75.5% | 68.8% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 4.29e-01 | 95.9% | 75.0% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.59 | 46.0 | 4.64e-01 | 85.7% | 95.9% |
| 2ltuA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 42.0 | 3.93e-01 | 98.0% | 61.3% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.57 | 42.0 | 4.19e-01 | 81.6% | 92.0% |
| 1mwrA03 | 3.30.1390.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Penicillin-binding protein 2a; domain 3 | 0.56 | 46.0 | 4.12e-01 | 91.8% | 90.0% |
| 4h0eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.16e-01 | 95.9% | 77.1% |
| 1pjuA01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.55 | 38.0 | 3.62e-01 | 100.0% | 58.7% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.90e-01 | 95.9% | 63.0% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.53 | 43.0 | 4.46e-01 | 91.8% | 97.8% |
| 1o57A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.91e-01 | 95.9% | 72.2% |
| 2phcB02 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.52 | 37.0 | 2.82e-01 | 73.5% | 54.9% |
| 1aipH03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 37.0 | 3.71e-01 | 91.8% | 76.9% |
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 43.0 | 2.93e-01 | 93.9% | 64.9% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.86 | 76.0 | 7.59e-01 | 98.0% | 96.0% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.85 | 76.0 | 6.80e-01 | 100.0% | 71.0% |
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.84 | 74.0 | 6.58e-01 | 100.0% | 69.6% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.81 | 71.0 | 5.93e-01 | 100.0% | 58.8% |
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.81 | 69.0 | 6.93e-01 | 100.0% | 94.0% |
| 1149482 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.70 | 47.0 | 4.87e-01 | 71.4% | 93.6% |
| 3476358 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 45.0 | 4.21e-01 | 71.4% | 93.3% |
| 3698670 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.63 | 49.0 | 4.57e-01 | 83.7% | 86.7% |
| 3598919 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.62 | 49.0 | 3.10e-01 | 85.7% | 59.6% |
| 3367888 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.62 | 49.0 | 4.35e-01 | 85.7% | 75.7% |
| 4492966 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.62 | 49.0 | 4.73e-01 | 85.7% | 87.3% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.62 | 49.0 | 4.89e-01 | 85.7% | 96.0% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.62 | 45.0 | 4.53e-01 | 79.6% | 96.1% |
| 3967226 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.62 | 50.0 | 4.55e-01 | 93.9% | 75.7% |
| 3969915 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.62 | 47.0 | 4.19e-01 | 83.7% | 74.3% |
| 3337080 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.62 | 49.0 | 4.55e-01 | 85.7% | 80.0% |
| 4968600 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.61 | 52.0 | 4.15e-01 | 95.9% | 49.0% |
| 3324708 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.61 | 48.0 | 4.51e-01 | 85.7% | 80.0% |
| 4216124 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.61 | 46.0 | 4.83e-01 | 81.6% | 100.0% |
| 3655335 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.60 | 47.0 | 3.23e-01 | 85.7% | 28.5% |
| 3933682 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.60 | 41.0 | 3.21e-01 | 100.0% | 31.3% |
| 1759182 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.60 | 47.0 | 4.66e-01 | 85.7% | 94.1% |
| 3165071 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.60 | 45.0 | 4.34e-01 | 81.6% | 89.1% |
| 3691758 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.60 | 47.0 | 4.53e-01 | 85.7% | 92.7% |
| 3985839 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.60 | 44.0 | 3.97e-01 | 81.6% | 68.6% |
| 3232962 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.60 | 46.0 | 4.35e-01 | 85.7% | 80.0% |
| 3452845 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 46.0 | 4.46e-01 | 85.7% | 85.5% |
| 3186054 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 45.0 | 4.48e-01 | 83.7% | 98.0% |
| 3903953 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 47.0 | 4.68e-01 | 87.8% | 92.0% |
| 3974521 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 46.0 | 4.30e-01 | 85.7% | 78.3% |
| 3846469 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 46.0 | 3.77e-01 | 85.7% | 53.3% |
| 4249176 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 44.0 | 4.18e-01 | 83.7% | 76.7% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.58 | 45.0 | 4.24e-01 | 85.7% | 95.0% |
| 3981327 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 45.0 | 4.41e-01 | 85.7% | 88.9% |
| 3636417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.58 | 44.0 | 4.32e-01 | 83.7% | 98.1% |
| 3413357 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 46.0 | 4.10e-01 | 87.8% | 78.6% |
| 3898121 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 44.0 | 4.32e-01 | 85.7% | 83.6% |
| 3190144 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 46.0 | 4.61e-01 | 87.8% | 98.0% |
| 3349612 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.58 | 44.0 | 4.47e-01 | 85.7% | 92.0% |
| 3947892 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 45.0 | 4.51e-01 | 89.8% | 92.0% |
| 4128043 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.56 | 46.0 | 4.82e-01 | 91.8% | 97.8% |
| 4491522 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.56 | 42.0 | 3.99e-01 | 83.7% | 83.3% |
| 3456918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.56 | 47.0 | 3.76e-01 | 95.9% | 66.0% |
| 4023232 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.56 | 45.0 | 4.21e-01 | 89.8% | 98.3% |
| 3989756 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.55 | 40.0 | 4.07e-01 | 81.6% | 100.0% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.55 | 43.0 | 4.43e-01 | 93.9% | 95.6% |
| 3261110 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.54 | 40.0 | 3.93e-01 | 81.6% | 98.1% |
| 3585074 | 206.1.1.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC | 0.52 | 40.0 | 2.43e-01 | 89.8% | 41.3% |
D2
high
residues 136-184
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213