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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00522
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00522
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 108-147
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.69 | 43.0 | 3.84e-01 | 72.5% | 43.9% |
| 3hklA00 | 1.10.2000.10 | Mainly Alpha › Orthogonal Bundle › Frizzled cysteine-rich domain › Frizzled cysteine-rich domain | 0.61 | 46.0 | 3.17e-01 | 82.5% | 23.4% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 37.0 | 2.80e-01 | 70.0% | 28.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938457 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.57 | 45.0 | 2.81e-01 | 90.0% | 43.4% |
| 3486403 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 46.0 | 2.73e-01 | 97.5% | 54.0% |
| 5001205 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.53 | 45.0 | 2.95e-01 | 100.0% | 62.2% |
| 3694024 | 2002.1.1.176 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP_mutase | 0.52 | 37.0 | 2.34e-01 | 85.0% | 32.1% |