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JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00525
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00525
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-81
Domain cluster:
rep: ON470598.1__URC09528.1__X__00052__D66-153
CATH (66)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 63.0 | 6.15e-01 | 100.0% | 87.4% |
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.72 | 48.0 | 5.32e-01 | 82.5% | 87.3% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 53.0 | 5.16e-01 | 100.0% | 70.0% |
| 2dyiA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.70 | 58.0 | 5.78e-01 | 100.0% | 86.9% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.70 | 54.0 | 5.65e-01 | 100.0% | 94.4% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.69 | 62.0 | 5.59e-01 | 98.8% | 81.7% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.69 | 54.0 | 5.55e-01 | 83.7% | 88.0% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.69 | 56.0 | 5.74e-01 | 100.0% | 94.7% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.69 | 62.0 | 5.99e-01 | 100.0% | 93.3% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 56.0 | 5.74e-01 | 100.0% | 96.0% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.68 | 57.0 | 5.12e-01 | 91.3% | 73.9% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.68 | 58.0 | 5.85e-01 | 100.0% | 96.2% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.67 | 60.0 | 5.84e-01 | 100.0% | 96.6% |
| 3kewA01 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.67 | 54.0 | 5.31e-01 | 100.0% | 82.1% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.67 | 53.0 | 3.91e-01 | 100.0% | 31.0% |
| 4he6A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 59.0 | 5.76e-01 | 100.0% | 91.0% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 55.0 | 5.35e-01 | 90.0% | 87.5% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 53.0 | 4.11e-01 | 88.7% | 81.0% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 54.0 | 5.06e-01 | 100.0% | 74.5% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.65 | 54.0 | 4.65e-01 | 90.0% | 73.0% |
| 2qf4A01 | 2.40.10.340 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 | 0.65 | 50.0 | 5.11e-01 | 100.0% | 86.1% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 55.0 | 5.55e-01 | 100.0% | 96.2% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 53.0 | 4.95e-01 | 90.0% | 74.5% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.63 | 55.0 | 5.04e-01 | 100.0% | 90.8% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 53.0 | 4.13e-01 | 93.8% | 70.8% |
| 2d37A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 53.0 | 4.28e-01 | 93.8% | 74.8% |
| 5choF00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 53.0 | 4.25e-01 | 93.8% | 75.0% |
| 2r6vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 53.0 | 4.20e-01 | 93.8% | 79.3% |
| 1ja1A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 55.0 | 4.84e-01 | 100.0% | 92.6% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 53.0 | 4.32e-01 | 93.8% | 73.8% |
| 3bnkA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.02e-01 | 93.8% | 70.4% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.30e-01 | 93.8% | 72.5% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.27e-01 | 93.8% | 73.7% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.22e-01 | 93.8% | 75.0% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 52.0 | 4.16e-01 | 93.8% | 73.9% |
| 4xhyA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 51.0 | 4.13e-01 | 93.8% | 71.4% |
| 1i0rA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 51.0 | 4.12e-01 | 93.8% | 75.2% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 51.0 | 4.13e-01 | 93.8% | 73.7% |
| 2egvA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.61 | 43.0 | 4.67e-01 | 83.7% | 92.4% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 50.0 | 4.73e-01 | 95.0% | 77.1% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 44.0 | 3.97e-01 | 83.7% | 78.2% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 49.0 | 4.52e-01 | 92.5% | 84.5% |
| 5afoA01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.56 | 48.0 | 3.90e-01 | 97.5% | 90.0% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.56 | 40.0 | 3.44e-01 | 73.8% | 75.2% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.55 | 46.0 | 4.21e-01 | 100.0% | 71.2% |
| 5swiD01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 49.0 | 3.43e-01 | 98.8% | 66.0% |
| 4nzrM03 | 3.30.110.180 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.54 | 42.0 | 3.64e-01 | 83.7% | 63.4% |
| 3lb6C01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.84e-01 | 98.8% | 71.6% |
| 1k85A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.91e-01 | 100.0% | 75.0% |
| 1ix2A00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 4.16e-01 | 98.8% | 91.2% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.64e-01 | 98.8% | 62.3% |
| 1j0hA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.89e-01 | 100.0% | 69.6% |
| 1r17A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 46.0 | 3.69e-01 | 100.0% | 78.5% |
| 2b5iB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 4.25e-01 | 98.8% | 84.0% |
| 2w1nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.87e-01 | 97.5% | 79.3% |
| 7sf2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.98e-01 | 98.8% | 79.6% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 39.0 | 4.04e-01 | 100.0% | 90.4% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 4.11e-01 | 97.5% | 80.2% |
| 4m8rA01 | 2.60.40.3920 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 4.06e-01 | 100.0% | 86.4% |
| 7l15A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.88e-01 | 100.0% | 81.4% |
| 1bquA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 43.0 | 4.08e-01 | 100.0% | 81.0% |
| 1j5uA01 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.50 | 37.0 | 3.24e-01 | 88.7% | 52.1% |
| 4ympA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 40.0 | 3.64e-01 | 100.0% | 63.4% |
| 2blfA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 3.93e-01 | 100.0% | 74.6% |
| 7k0zC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 40.0 | 3.78e-01 | 97.5% | 89.2% |
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.94e-01 | 100.0% | 80.4% |
ECOD (81)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995824 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.86 | 74.0 | 7.71e-01 | 97.5% | 98.6% |
| 3512272 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.77 | 64.0 | 6.66e-01 | 100.0% | 94.7% |
| 4209058 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.75 | 69.0 | 6.40e-01 | 100.0% | 88.0% |
| 5025767 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 63.0 | 6.02e-01 | 100.0% | 80.0% |
| 4265094 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.74 | 59.0 | 5.53e-01 | 100.0% | 70.5% |
| 4880414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 56.0 | 6.00e-01 | 100.0% | 94.2% |
| 5024522 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 67.0 | 5.23e-01 | 100.0% | 64.8% |
| 4521547 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.73 | 62.0 | 6.01e-01 | 100.0% | 82.2% |
| 4496887 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 61.0 | 5.42e-01 | 100.0% | 64.5% |
| 4111597 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 55.0 | 5.97e-01 | 100.0% | 98.5% |
| 3741921 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.73 | 66.0 | 6.04e-01 | 100.0% | 91.4% |
| 4950482 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 61.0 | 6.33e-01 | 98.8% | 97.3% |
| 4162532 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 57.0 | 5.92e-01 | 100.0% | 90.7% |
| 3951894 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.73 | 66.0 | 6.28e-01 | 100.0% | 91.6% |
| 3387360 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 58.0 | 5.72e-01 | 100.0% | 81.2% |
| 4976800 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 62.0 | 5.94e-01 | 100.0% | 81.1% |
| 4074297 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 62.0 | 5.47e-01 | 100.0% | 64.3% |
| 4945251 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 61.0 | 5.61e-01 | 100.0% | 72.0% |
| 4147655 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.72 | 59.0 | 5.50e-01 | 100.0% | 71.0% |
| 4403870 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.72 | 57.0 | 5.42e-01 | 100.0% | 72.6% |
| 4943228 | 1.1.7.146 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn | 0.72 | 55.0 | 5.94e-01 | 100.0% | 100.0% |
| 1213522 | 1.1.13.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_B-dom | 0.72 | 52.0 | 5.03e-01 | 82.5% | 69.0% |
| 4245518 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.72 | 56.0 | 5.82e-01 | 100.0% | 90.7% |
| 4066146 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 57.0 | 5.23e-01 | 100.0% | 65.7% |
| 4161414 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 64.0 | 5.98e-01 | 100.0% | 84.0% |
| 4060488 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 56.0 | 5.68e-01 | 100.0% | 85.0% |
| 5048557 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 60.0 | 5.80e-01 | 100.0% | 81.1% |
| 4970805 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 57.0 | 5.61e-01 | 100.0% | 80.0% |
| 4262187 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.71 | 65.0 | 6.12e-01 | 100.0% | 85.3% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 58.0 | 5.59e-01 | 100.0% | 78.9% |
| 5036479 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 59.0 | 5.31e-01 | 100.0% | 65.5% |
| 4322439 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 57.0 | 5.13e-01 | 100.0% | 63.6% |
| 3611250 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.71 | 60.0 | 4.91e-01 | 92.5% | 83.4% |
| 4395520 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 63.0 | 5.96e-01 | 100.0% | 83.2% |
| 4286344 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 63.0 | 5.96e-01 | 100.0% | 93.7% |
| 5079180 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.70 | 62.0 | 5.94e-01 | 100.0% | 85.6% |
| 3967745 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.70 | 56.0 | 5.75e-01 | 100.0% | 93.3% |
| 4932394 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 55.0 | 5.09e-01 | 100.0% | 67.7% |
| 4391995 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 62.0 | 6.15e-01 | 100.0% | 94.1% |
| 4946634 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 60.0 | 5.82e-01 | 100.0% | 84.4% |
| 4500974 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.69 | 58.0 | 4.98e-01 | 88.7% | 65.0% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 53.0 | 5.54e-01 | 100.0% | 94.3% |
| 3602200 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 54.0 | 5.73e-01 | 100.0% | 98.6% |
| 3813200 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.69 | 62.0 | 5.49e-01 | 100.0% | 74.6% |
| 4068826 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.68 | 60.0 | 5.82e-01 | 100.0% | 86.7% |
| 5079595 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.68 | 60.0 | 5.64e-01 | 100.0% | 81.1% |
| 4991129 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 57.0 | 5.66e-01 | 100.0% | 89.3% |
| 3732283 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.67 | 59.0 | 5.20e-01 | 98.8% | 94.2% |
| 5053561 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 61.0 | 5.87e-01 | 100.0% | 95.6% |
| 4977991 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 58.0 | 5.04e-01 | 100.0% | 86.2% |
| 4347477 | 11.1.1.171 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 | 0.67 | 53.0 | 5.34e-01 | 98.8% | 86.3% |
| 4469793 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.67 | 53.0 | 5.52e-01 | 91.3% | 92.0% |
| 3542635 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.66 | 60.0 | 5.03e-01 | 100.0% | 65.2% |
| 4939469 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.66 | 59.0 | 5.62e-01 | 100.0% | 85.3% |
| 4210849 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.66 | 56.0 | 5.50e-01 | 92.5% | 85.9% |
| 4980136 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.66 | 58.0 | 5.64e-01 | 100.0% | 94.4% |
| 4373119 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 59.0 | 5.71e-01 | 100.0% | 88.9% |
| 5036581 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 53.0 | 4.98e-01 | 100.0% | 72.0% |
| 4559177 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 59.0 | 5.47e-01 | 100.0% | 94.0% |
| 5075955 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 57.0 | 5.56e-01 | 100.0% | 95.5% |
| 4947671 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 56.0 | 5.65e-01 | 97.5% | 100.0% |
| 3786245 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.64 | 54.0 | 5.39e-01 | 91.3% | 88.0% |
| 3699517 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.63 | 57.0 | 4.92e-01 | 100.0% | 77.6% |
| 4155389 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.63 | 57.0 | 5.03e-01 | 100.0% | 73.9% |
| 4412962 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.62 | 55.0 | 4.91e-01 | 100.0% | 76.5% |
| 3714390 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.62 | 55.0 | 4.76e-01 | 100.0% | 65.6% |
| 3690254 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 51.0 | 4.96e-01 | 93.8% | 95.6% |
| 4980441 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 53.0 | 5.11e-01 | 100.0% | 93.7% |
| 3221539 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.60 | 53.0 | 3.62e-01 | 97.5% | 42.7% |
| 3264859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 52.0 | 4.83e-01 | 100.0% | 79.0% |
| 3896651 | 11.1.1.991 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28112 | 0.58 | 52.0 | 4.70e-01 | 100.0% | 80.0% |
| 5056756 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 42.0 | 3.97e-01 | 98.8% | 63.0% |
| 3254695 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.57 | 47.0 | 4.50e-01 | 100.0% | 80.0% |
| 3894573 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 44.0 | 4.33e-01 | 98.8% | 78.8% |
| 3774761 | 11.1.1.275 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N | 0.56 | 42.0 | 4.16e-01 | 100.0% | 76.5% |
| 4517808 | 11.1.1.1086 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28829 | 0.55 | 46.0 | 4.23e-01 | 100.0% | 82.7% |
| 4083039 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 4.12e-01 | 100.0% | 85.2% |
| 5060580 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 4.18e-01 | 100.0% | 78.2% |
| 3606655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 47.0 | 4.31e-01 | 100.0% | 86.7% |
| 3625411 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 4.01e-01 | 100.0% | 78.3% |
| 3268230 | 11.1.1.1097 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7932 | 0.51 | 43.0 | 3.77e-01 | 100.0% | 86.2% |
D2
high
residues 116-172
Domain cluster:
rep: HQ332140.1__AGG54641.1__PRQG_00038__00034__D568-616
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.64 | 43.0 | 3.03e-01 | 70.2% | 43.9% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.55 | 31.0 | 2.70e-01 | 82.5% | 31.1% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 41.0 | 3.20e-01 | 82.5% | 57.4% |
| 4oj5B01 | 3.30.2020.50 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.53 | 35.0 | 3.24e-01 | 70.2% | 89.0% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.52 | 35.0 | 2.99e-01 | 75.4% | 39.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.77 | 66.0 | 3.83e-01 | 93.0% | 34.3% |
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.67 | 45.0 | 4.69e-01 | 70.2% | 94.0% |
| 3890372 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 43.0 | 3.55e-01 | 77.2% | 57.3% |
| 3838580 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.58 | 42.0 | 2.91e-01 | 75.4% | 30.6% |
| 2442382 | 3856.1.1.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Tail_spike_N | 0.54 | 36.0 | 2.56e-01 | 70.2% | 37.4% |
| 3509730 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 41.0 | 2.52e-01 | 93.0% | 30.1% |
| 1513169 | 6043.1.1.2 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › DUF4309 | 0.50 | 37.0 | 3.31e-01 | 78.9% | 96.3% |
D3
high
residues 179-287
Domain cluster:
rep: IMGVR_UViG_3300015214_002962-3300015214-Ga0172382_100065621__D24-131