←Back to structures
JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00553
Bact-VirJSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00553
Identity
- Kingdom:
- phage
Quality
73.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 95-245
Domain cluster:
rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00808__D1309-1457
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 39.0 | 4.26e-01 | 100.0% | 76.9% |
| 2hw4A01 | 3.50.20.20 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus | 0.57 | 33.0 | 3.83e-01 | 76.2% | 77.3% |
| 4do8A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 25.0 | 3.47e-01 | 100.0% | 98.5% |
| 3l6pA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 31.0 | 3.57e-01 | 98.7% | 83.8% |
| 7pyvC02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 23.0 | 3.08e-01 | 75.5% | 84.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3679339 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.54 | 40.0 | 3.95e-01 | 97.4% | 70.9% |
| 3338210 | 224.1.1.3 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen | 0.53 | 38.0 | 3.66e-01 | 72.8% | 80.4% |
| 3227513 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.53 | 33.0 | 3.88e-01 | 70.2% | 90.5% |
| 223446 | 72.1.1.8 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › IL4_i_Ig | 0.51 | 28.0 | 3.24e-01 | 95.4% | 73.6% |
| 3924467 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 28.0 | 3.46e-01 | 70.2% | 90.0% |
D2
high
residues 588-639
Domain cluster:
rep: LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00013__D8-52
D3
high
residues 769-880
D4
medium
residues 1-94_501-548
Domain cluster:
representative
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3654254 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.63 | 30.0 | 4.23e-01 | 81.7% | 96.9% |
| 3274073 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.62 | 30.0 | 3.65e-01 | 81.7% | 69.5% |
| 2388639 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.61 | 31.0 | 3.61e-01 | 81.0% | 68.7% |
| 3659041 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.60 | 30.0 | 3.73e-01 | 81.0% | 76.4% |
| 3654301 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.60 | 30.0 | 2.81e-01 | 81.7% | 37.2% |
| 3321872 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.60 | 29.0 | 4.07e-01 | 82.4% | 97.1% |
| 3615104 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.59 | 31.0 | 3.69e-01 | 81.7% | 73.7% |
| 3733574 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.59 | 30.0 | 4.13e-01 | 83.1% | 100.0% |
| 3235645 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.58 | 29.0 | 3.32e-01 | 81.7% | 60.9% |
| 4017407 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.58 | 29.0 | 3.94e-01 | 82.4% | 95.7% |
| 1893440 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.57 | 29.0 | 3.32e-01 | 81.7% | 63.2% |
| 3771985 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.57 | 29.0 | 3.63e-01 | 81.0% | 78.9% |
| 3594316 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.57 | 29.0 | 3.68e-01 | 83.1% | 82.4% |
| 3785041 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.55 | 30.0 | 3.78e-01 | 83.8% | 91.3% |
| 1919639 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.52 | 29.0 | 3.52e-01 | 82.4% | 83.5% |