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JX006077.1__AFM10401.1__PIS_012__00012
Bact-VirJX006077.1__AFM10401.1__PIS_012__00012
Identity
- Accession:
- JX006077 ↗
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-212
Domain cluster:
representative
CATH (2)
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3229101 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.67 | 25.0 | 4.18e-01 | 96.5% | 94.5% |
| 3404297 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.66 | 20.0 | 4.00e-01 | 81.3% | 100.0% |
| 3618896 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.64 | 22.0 | 3.94e-01 | 79.8% | 96.9% |
| 4946507 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 19.0 | 3.19e-01 | 77.8% | 77.3% |
D2
high
residues 214-285
Domain cluster:
rep: MF959999.1__ATN93350.1__X__00032__D1-89
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.79 | 54.0 | 4.88e-01 | 84.7% | 52.6% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.78 | 61.0 | 6.14e-01 | 88.9% | 83.3% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 58.0 | 4.87e-01 | 87.5% | 47.9% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 60.0 | 6.06e-01 | 93.1% | 83.6% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 61.0 | 5.48e-01 | 97.2% | 62.6% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.75 | 57.0 | 5.90e-01 | 88.9% | 86.6% |
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.73 | 62.0 | 5.11e-01 | 91.7% | 79.4% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.71 | 59.0 | 5.05e-01 | 90.3% | 87.6% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.70 | 55.0 | 5.38e-01 | 97.2% | 77.8% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.68 | 55.0 | 4.58e-01 | 90.3% | 76.2% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.68 | 60.0 | 4.81e-01 | 98.6% | 65.7% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 33.0 | 2.93e-01 | 90.3% | 34.0% |
| 2kvvA00 | 1.10.1660.60 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 | 0.65 | 55.0 | 5.41e-01 | 95.8% | 87.2% |
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 49.0 | 5.04e-01 | 98.6% | 91.2% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 51.0 | 5.18e-01 | 94.4% | 95.7% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.59 | 34.0 | 4.04e-01 | 83.3% | 85.7% |
| 2i7aA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 49.0 | 3.91e-01 | 98.6% | 44.6% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 37.0 | 3.85e-01 | 72.2% | 69.7% |
| 1qbjC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 37.0 | 3.86e-01 | 72.2% | 71.2% |
| 3u9gA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 36.0 | 3.80e-01 | 72.2% | 71.0% |
| 3mlfE00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 35.0 | 3.31e-01 | 75.0% | 52.3% |
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.56 | 49.0 | 4.79e-01 | 98.6% | 92.4% |
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 35.0 | 3.84e-01 | 72.2% | 75.4% |
| 3mfdA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 47.0 | 3.38e-01 | 98.6% | 58.9% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.55 | 38.0 | 2.67e-01 | 93.1% | 20.3% |
| 4wriA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 44.0 | 3.26e-01 | 86.1% | 33.7% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.64e-01 | 88.9% | 54.8% |
| 4o5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 4.06e-01 | 79.2% | 77.5% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.13e-01 | 79.2% | 38.4% |
| 4c3iA04 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.55 | 49.0 | 3.72e-01 | 98.6% | 78.9% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 3.71e-01 | 91.7% | 53.5% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.82e-01 | 72.2% | 74.3% |
| 1s3jA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.77e-01 | 72.2% | 76.6% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.34e-01 | 87.5% | 44.0% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.93e-01 | 93.1% | 70.8% |
| 1xu6A00 | 4.10.110.20 | Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain | 0.52 | 34.0 | 3.34e-01 | 83.3% | 58.7% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.61e-01 | 81.9% | 99.0% |
| 6qdjA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 41.0 | 4.14e-01 | 91.7% | 97.4% |
| 6teyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.98e-01 | 87.5% | 82.2% |
| 4p72A04 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.52 | 44.0 | 4.36e-01 | 97.2% | 97.4% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.66e-01 | 88.9% | 59.6% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.08e-01 | 79.2% | 40.0% |
| 1jgsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.35e-01 | 90.3% | 46.4% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 36.0 | 3.75e-01 | 76.4% | 78.8% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 39.0 | 3.89e-01 | 84.7% | 88.2% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.84e-01 | 100.0% | 71.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.81e-01 | 90.3% | 76.7% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.84e-01 | 80.6% | 79.2% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.57e-01 | 79.2% | 72.9% |
| 3lmmC04 | 1.10.10.2340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 35.0 | 3.33e-01 | 72.2% | 65.5% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5070666 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.81 | 59.0 | 6.62e-01 | 86.1% | 100.0% |
| 3980161 | 101.1.9.45 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA | 0.81 | 56.0 | 6.28e-01 | 80.6% | 94.5% |
| 3589467 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.80 | 56.0 | 5.33e-01 | 80.6% | 62.4% |
| 3965196 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.80 | 62.0 | 6.67e-01 | 87.5% | 98.3% |
| 1827815 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.77 | 59.0 | 6.08e-01 | 88.9% | 86.8% |
| 3976015 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.77 | 59.0 | 5.71e-01 | 94.4% | 73.8% |
| 4034325 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.77 | 60.0 | 4.96e-01 | 94.4% | 48.0% |
| 4008376 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.77 | 58.0 | 6.29e-01 | 80.6% | 100.0% |
| 2325046 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.76 | 59.0 | 4.94e-01 | 87.5% | 50.0% |
| 4974340 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.76 | 55.0 | 6.15e-01 | 77.8% | 100.0% |
| 3281621 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.75 | 55.0 | 6.11e-01 | 86.1% | 100.0% |
| 1316879 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.75 | 59.0 | 6.28e-01 | 84.7% | 100.0% |
| 3291502 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.75 | 59.0 | 6.35e-01 | 83.3% | 100.0% |
| 4198222 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.75 | 52.0 | 5.28e-01 | 77.8% | 74.3% |
| 4420911 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.75 | 57.0 | 4.67e-01 | 95.8% | 44.4% |
| 3291393 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.74 | 59.0 | 5.04e-01 | 95.8% | 53.9% |
| 5075145 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.74 | 61.0 | 6.42e-01 | 91.7% | 100.0% |
| 4051681 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.73 | 57.0 | 4.62e-01 | 90.3% | 45.2% |
| 3281073 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.72 | 56.0 | 4.92e-01 | 87.5% | 57.1% |
| 3956825 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.72 | 47.0 | 5.43e-01 | 77.8% | 98.0% |
| 4090636 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.71 | 57.0 | 5.82e-01 | 91.7% | 90.0% |
| 4094061 | 101.1.9.98 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 | 0.70 | 58.0 | 5.57e-01 | 93.1% | 81.2% |
| 3282573 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.70 | 63.0 | 5.22e-01 | 100.0% | 81.6% |
| 3587635 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 54.0 | 5.83e-01 | 83.3% | 100.0% |
| 3281873 | 101.1.9.84 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 | 0.70 | 62.0 | 4.35e-01 | 100.0% | 43.0% |
| 3284686 | 101.1.9.84 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 | 0.69 | 61.0 | 4.29e-01 | 98.6% | 91.7% |
| 1844183 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.68 | 56.0 | 4.64e-01 | 91.7% | 73.5% |
| 5073620 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.68 | 52.0 | 5.44e-01 | 83.3% | 96.9% |
| 3942751 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.68 | 55.0 | 4.67e-01 | 94.4% | 53.3% |
| 4050041 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.68 | 49.0 | 5.35e-01 | 87.5% | 93.3% |
| 3946974 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 53.0 | 4.74e-01 | 93.1% | 60.0% |
| 4334333 | 101.1.9.1 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind | 0.67 | 56.0 | 4.52e-01 | 93.1% | 70.0% |
| 3948248 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 52.0 | 5.48e-01 | 90.3% | 95.4% |
| 4456842 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.67 | 50.0 | 5.36e-01 | 98.6% | 98.3% |
| 4056248 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 51.0 | 4.13e-01 | 81.9% | 45.9% |
| 3587879 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.66 | 58.0 | 5.07e-01 | 100.0% | 80.9% |
| 4057369 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.65 | 51.0 | 4.16e-01 | 98.6% | 44.3% |
| 4549467 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.65 | 44.0 | 4.72e-01 | 79.2% | 83.3% |
| 3274594 | 101.1.9.30 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N | 0.64 | 52.0 | 3.81e-01 | 95.8% | 32.5% |
| 4553544 | 3601.1.1.1 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg | 0.64 | 51.0 | 3.79e-01 | 97.2% | 32.8% |
| 2818084 | 101.1.9.22 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_54 | 0.63 | 53.0 | 4.75e-01 | 100.0% | 66.3% |
| 4031520 | 101.1.9.64 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_23 | 0.62 | 49.0 | 5.06e-01 | 87.5% | 98.5% |
| 4097210 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.62 | 42.0 | 4.57e-01 | 79.2% | 90.9% |
| 4551162 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.62 | 42.0 | 4.32e-01 | 80.6% | 72.9% |
| 4039362 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.61 | 42.0 | 4.48e-01 | 87.5% | 85.0% |
| 4210562 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.61 | 46.0 | 4.96e-01 | 88.9% | 98.3% |
| 4329911 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.61 | 42.0 | 4.50e-01 | 86.1% | 85.0% |
| 4662222 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.61 | 36.0 | 3.01e-01 | 100.0% | 34.2% |
| 3979592 | 101.1.9.26 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like | 0.61 | 48.0 | 4.11e-01 | 97.2% | 52.5% |
| 3976170 | 101.1.9.26 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like | 0.61 | 50.0 | 5.05e-01 | 93.1% | 97.1% |
| 4271625 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.61 | 41.0 | 4.39e-01 | 80.6% | 85.0% |
| 3284690 | 3601.1.1.0 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain | 0.61 | 50.0 | 3.94e-01 | 95.8% | 43.3% |
| 3366705 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 41.0 | 4.33e-01 | 86.1% | 80.0% |
| 4142235 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.60 | 40.0 | 3.70e-01 | 79.2% | 50.0% |
| 4221363 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.60 | 41.0 | 4.20e-01 | 80.6% | 72.9% |
| 3466479 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 3.38e-01 | 72.2% | 45.0% |
| 5054826 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.60 | 39.0 | 3.60e-01 | 72.2% | 52.2% |
| 4271700 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.60 | 41.0 | 4.28e-01 | 86.1% | 78.5% |
| 4352200 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.60 | 40.0 | 4.09e-01 | 79.2% | 71.4% |
| 4999189 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.16e-01 | 94.4% | 65.6% |
| 282935 | 3601.1.1.1 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg | 0.58 | 46.0 | 3.43e-01 | 95.8% | 32.7% |
| 3600755 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 48.0 | 4.22e-01 | 94.4% | 63.6% |
| 3716764 | 101.15.1.12 ↗ | alpha arrays › HTH › LysM domain › LysM domain › PF30403 | 0.56 | 39.0 | 4.21e-01 | 97.2% | 86.7% |
| 4079854 | 101.1.2.530 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 | 0.55 | 41.0 | 4.12e-01 | 93.1% | 78.7% |
| 4976434 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 38.0 | 4.03e-01 | 81.9% | 84.6% |
| 4599881 | 1166.1.1.1 ↗ | alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC | 0.53 | 43.0 | 3.23e-01 | 93.1% | 37.4% |
| 3587558 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.84e-01 | 81.9% | 75.7% |
| 2701 | 101.1.2.109 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rio2_N | 0.53 | 42.0 | 3.93e-01 | 93.1% | 70.8% |
| 5050160 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.84e-01 | 84.7% | 72.9% |
| 3961212 | 101.1.9.104 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ad_Cy_reg | 0.52 | 39.0 | 3.79e-01 | 86.1% | 70.6% |
| 3972660 | 101.1.2.494 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25873 | 0.52 | 43.0 | 3.98e-01 | 95.8% | 91.6% |
| 3603567 | 101.1.2.32 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rrf2 | 0.51 | 37.0 | 3.80e-01 | 75.0% | 78.6% |
| 3284225 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 39.0 | 3.84e-01 | 88.9% | 78.8% |
| 4944487 | 101.1.2.751 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6293_C | 0.51 | 36.0 | 3.18e-01 | 81.9% | 49.1% |
| 3285732 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.26e-01 | 91.7% | 45.7% |
| 4996888 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.50 | 38.0 | 3.40e-01 | 84.7% | 81.8% |
D3
high
residues 294-348
Domain cluster:
representative
CATH (73)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iu5B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.82 | 69.0 | 4.82e-01 | 100.0% | 29.4% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.80 | 65.0 | 5.65e-01 | 100.0% | 58.8% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.79 | 71.0 | 6.59e-01 | 100.0% | 80.9% |
| 2a7oA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.78 | 69.0 | 5.65e-01 | 100.0% | 56.0% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 52.0 | 4.17e-01 | 70.9% | 43.7% |
| 3h87B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.74 | 53.0 | 3.95e-01 | 80.0% | 30.4% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.72 | 52.0 | 3.77e-01 | 76.4% | 33.8% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 51.0 | 4.44e-01 | 76.4% | 52.9% |
| 1jb0K00 | 1.20.860.20 | Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre | 0.71 | 53.0 | 5.58e-01 | 98.2% | 97.8% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.71 | 57.0 | 4.72e-01 | 90.9% | 94.1% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.71 | 55.0 | 3.88e-01 | 83.6% | 30.3% |
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.71 | 59.0 | 5.31e-01 | 100.0% | 66.3% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 51.0 | 4.18e-01 | 78.2% | 43.6% |
| 2x9xA04 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 50.0 | 5.09e-01 | 81.8% | 77.8% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 47.0 | 4.46e-01 | 70.9% | 63.2% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.69 | 50.0 | 4.27e-01 | 76.4% | 51.1% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 49.0 | 4.64e-01 | 76.4% | 77.3% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.69 | 60.0 | 5.06e-01 | 98.2% | 59.3% |
| 3gzfD00 | 1.10.150.420 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus | 0.69 | 45.0 | 3.79e-01 | 96.4% | 40.7% |
| 3dl1A01 | 1.10.472.150 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain | 0.68 | 52.0 | 4.38e-01 | 96.4% | 47.5% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 49.0 | 4.79e-01 | 76.4% | 88.1% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.68 | 56.0 | 4.09e-01 | 92.7% | 63.8% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 48.0 | 4.34e-01 | 76.4% | 57.9% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.67 | 58.0 | 4.81e-01 | 100.0% | 53.9% |
| 4yozA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 59.0 | 4.12e-01 | 100.0% | 39.4% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.67 | 57.0 | 3.90e-01 | 92.7% | 39.7% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.67 | 51.0 | 3.99e-01 | 83.6% | 42.7% |
| 4am6A03 | 3.30.420.580 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.66 | 58.0 | 3.74e-01 | 100.0% | 58.5% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.66 | 55.0 | 4.37e-01 | 100.0% | 74.2% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.65 | 48.0 | 3.91e-01 | 92.7% | 41.5% |
| 2lnlA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.65 | 54.0 | 3.46e-01 | 100.0% | 19.3% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.65 | 55.0 | 4.76e-01 | 96.4% | 78.2% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.65 | 53.0 | 3.89e-01 | 98.2% | 33.1% |
| 2pybA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 51.0 | 3.82e-01 | 90.9% | 74.2% |
| 5awwY00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.64 | 53.0 | 3.22e-01 | 100.0% | 13.2% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.64 | 48.0 | 3.92e-01 | 83.6% | 44.9% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.63 | 55.0 | 4.42e-01 | 98.2% | 52.7% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.63 | 53.0 | 4.97e-01 | 98.2% | 100.0% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 51.0 | 4.08e-01 | 90.9% | 87.5% |
| 1c17M00 | 1.20.120.220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A | 0.63 | 54.0 | 4.05e-01 | 98.2% | 38.7% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.62 | 47.0 | 3.62e-01 | 83.6% | 36.3% |
| 3udcA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 54.0 | 4.28e-01 | 98.2% | 60.0% |
| 1exzB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 50.0 | 3.74e-01 | 89.1% | 61.4% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 46.0 | 3.82e-01 | 85.5% | 42.0% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.62 | 49.0 | 4.08e-01 | 83.6% | 60.0% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 43.0 | 3.89e-01 | 76.4% | 50.6% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.61 | 46.0 | 3.95e-01 | 81.8% | 49.5% |
| 3er9B01 | 1.20.1270.320 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Poxvirus poly(A) polymerase, N domain | 0.61 | 49.0 | 4.11e-01 | 94.5% | 76.4% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.60 | 50.0 | 4.03e-01 | 100.0% | 46.4% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.60 | 46.0 | 3.95e-01 | 83.6% | 52.3% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 42.0 | 3.58e-01 | 76.4% | 48.0% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 54.0 | 3.92e-01 | 100.0% | 91.7% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 49.0 | 3.74e-01 | 92.7% | 47.8% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 4.25e-01 | 76.4% | 75.0% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.59 | 49.0 | 4.00e-01 | 100.0% | 78.9% |
| 4gouA03 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.58 | 44.0 | 3.03e-01 | 81.8% | 48.7% |
| 1khcA02 | 1.10.720.50 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain | 0.58 | 42.0 | 3.91e-01 | 76.4% | 62.3% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.58 | 51.0 | 4.00e-01 | 100.0% | 62.4% |
| 2z3tA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 48.0 | 2.97e-01 | 98.2% | 25.7% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 52.0 | 3.76e-01 | 100.0% | 70.7% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.58 | 46.0 | 3.71e-01 | 100.0% | 41.8% |
| 1e91A00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.57 | 41.0 | 3.57e-01 | 83.6% | 49.4% |
| 2ahmG01 | 6.10.250.2820 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 43.0 | 3.48e-01 | 80.0% | 66.7% |
| 1x31B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 48.0 | 3.21e-01 | 98.2% | 66.7% |
| 3m6jA01 | 1.20.1260.40 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.57 | 48.0 | 3.76e-01 | 98.2% | 44.4% |
| 1nlxA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.57 | 47.0 | 3.89e-01 | 96.4% | 50.0% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 46.0 | 4.73e-01 | 96.4% | 98.0% |
| 4f0jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 45.0 | 2.82e-01 | 90.9% | 21.8% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.56 | 49.0 | 4.79e-01 | 96.4% | 98.3% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.55 | 45.0 | 4.30e-01 | 96.4% | 95.5% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 43.0 | 3.35e-01 | 89.1% | 60.0% |
| 2h8aA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.50 | 42.0 | 3.40e-01 | 100.0% | 46.3% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 45.0 | 3.44e-01 | 98.2% | 64.2% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3545789 | 3542.1.1.12 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › TM7S3_TM198 | 0.79 | 67.0 | 4.52e-01 | 96.4% | 27.8% |
| 3164721 | 1078.1.1.0 ↗ | extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit | 0.79 | 68.0 | 5.79e-01 | 100.0% | 58.9% |
| 3067828 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.77 | 59.0 | 5.26e-01 | 100.0% | 59.0% |
| 4145392 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.77 | 54.0 | 3.56e-01 | 74.5% | 38.1% |
| 4031366 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.77 | 69.0 | 4.48e-01 | 100.0% | 23.8% |
| 3222449 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.75 | 67.0 | 4.15e-01 | 100.0% | 29.1% |
| 3410128 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.74 | 53.0 | 5.04e-01 | 76.4% | 80.0% |
| 3813837 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.74 | 53.0 | 4.75e-01 | 76.4% | 64.0% |
| 3957615 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.73 | 64.0 | 5.16e-01 | 98.2% | 52.4% |
| 3492508 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.73 | 64.0 | 3.63e-01 | 100.0% | 16.7% |
| 3600517 | 3542.1.1.0 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases | 0.73 | 63.0 | 4.00e-01 | 100.0% | 20.0% |
| 3575774 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.73 | 63.0 | 4.74e-01 | 100.0% | 39.3% |
| 3832382 | 5069.1.3.60 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 | 0.72 | 53.0 | 4.01e-01 | 76.4% | 37.5% |
| 3489761 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.72 | 55.0 | 3.57e-01 | 81.8% | 31.1% |
| 3263943 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.72 | 64.0 | 3.91e-01 | 100.0% | 16.7% |
| 3732514 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.71 | 66.0 | 4.00e-01 | 100.0% | 25.0% |
| 3601239 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.70 | 48.0 | 3.08e-01 | 100.0% | 17.3% |
| 3229717 | 3470.1.1.29 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV | 0.69 | 56.0 | 5.23e-01 | 90.9% | 84.3% |
| 4625812 | 2006.1.4.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 | 0.69 | 59.0 | 3.88e-01 | 98.2% | 23.3% |
| 4242465 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.69 | 61.0 | 5.07e-01 | 100.0% | 58.9% |
| 3654648 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.68 | 56.0 | 5.30e-01 | 98.2% | 80.0% |
| 3991853 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 58.0 | 4.81e-01 | 100.0% | 53.3% |
| 5029746 | 3542.1.1.2 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP | 0.68 | 57.0 | 3.66e-01 | 96.4% | 19.3% |
| 4959275 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.68 | 48.0 | 3.36e-01 | 76.4% | 24.9% |
| 3578352 | 109.4.1.884 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_UBP24_USP9X-Y | 0.68 | 48.0 | 3.34e-01 | 76.4% | 24.2% |
| 4852268 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.68 | 56.0 | 4.69e-01 | 94.5% | 53.1% |
| 3680153 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.67 | 48.0 | 3.95e-01 | 76.4% | 46.0% |
| 3182867 | 2006.1.4.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 | 0.67 | 57.0 | 5.13e-01 | 100.0% | 95.0% |
| 5012157 | 605.1.1.354 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 | 0.67 | 57.0 | 5.02e-01 | 98.2% | 72.9% |
| 3981640 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.67 | 52.0 | 4.40e-01 | 90.9% | 51.1% |
| 4929490 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.67 | 57.0 | 4.76e-01 | 100.0% | 54.7% |
| 5068089 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.67 | 57.0 | 4.58e-01 | 100.0% | 48.7% |
| 4961187 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.67 | 58.0 | 4.50e-01 | 100.0% | 49.6% |
| 3598704 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.66 | 57.0 | 4.14e-01 | 98.2% | 34.2% |
| 3234298 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.66 | 47.0 | 4.72e-01 | 74.5% | 85.5% |
| 3417153 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.66 | 48.0 | 3.72e-01 | 78.2% | 38.4% |
| 5014057 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.66 | 54.0 | 4.13e-01 | 96.4% | 37.8% |
| 5072135 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.66 | 53.0 | 3.69e-01 | 100.0% | 26.2% |
| 3173720 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.65 | 58.0 | 3.63e-01 | 100.0% | 33.7% |
| 3797019 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 53.0 | 3.37e-01 | 96.4% | 17.3% |
| 3839514 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.64 | 56.0 | 4.31e-01 | 100.0% | 60.8% |
| 3963152 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.64 | 53.0 | 3.23e-01 | 90.9% | 15.4% |
| 5058985 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.64 | 57.0 | 4.07e-01 | 100.0% | 73.8% |
| 3393285 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.64 | 53.0 | 4.41e-01 | 98.2% | 52.4% |
| 4569675 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.64 | 56.0 | 4.57e-01 | 100.0% | 53.3% |
| 3389798 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.63 | 55.0 | 5.07e-01 | 98.2% | 82.9% |
| 3879363 | 621.1.1.2 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 | 0.63 | 49.0 | 4.44e-01 | 85.5% | 70.7% |
| 5054424 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.62 | 50.0 | 4.46e-01 | 89.1% | 61.3% |
| 3288144 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.62 | 49.0 | 4.09e-01 | 98.2% | 49.5% |
| 4020856 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.62 | 50.0 | 3.83e-01 | 98.2% | 37.8% |
| 3940867 | 632.22.1.67 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 | 0.61 | 53.0 | 4.46e-01 | 100.0% | 58.9% |
| 2430575 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.61 | 48.0 | 3.51e-01 | 92.7% | 29.9% |
| 4025522 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.60 | 49.0 | 3.33e-01 | 100.0% | 37.1% |
| 3495550 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 47.0 | 3.82e-01 | 100.0% | 44.8% |
| 5023334 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.60 | 52.0 | 4.67e-01 | 100.0% | 77.5% |
| 3655770 | 106.1.1.12 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › DUF247 | 0.60 | 50.0 | 3.38e-01 | 94.5% | 32.7% |
| 3588113 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.59 | 51.0 | 4.85e-01 | 98.2% | 86.2% |
| 4843090 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.59 | 47.0 | 3.80e-01 | 90.9% | 45.5% |
| 3196389 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.58 | 48.0 | 3.22e-01 | 100.0% | 25.5% |
| 5069771 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 52.0 | 3.86e-01 | 100.0% | 77.8% |
| 4301891 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.57 | 51.0 | 3.17e-01 | 100.0% | 43.7% |
| 3641205 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 44.0 | 2.83e-01 | 100.0% | 19.6% |
| 3630583 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.55 | 50.0 | 3.89e-01 | 98.2% | 71.8% |
| 3444874 | 3788.1.1.14 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › DUF247 | 0.54 | 47.0 | 4.07e-01 | 100.0% | 63.5% |
| 3504922 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 45.0 | 4.09e-01 | 98.2% | 67.5% |
| 3023635 | 5071.1.1.1 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge | 0.51 | 42.0 | 3.76e-01 | 100.0% | 80.2% |
| 3858558 | 4207.1.2.5 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › TEX13 | 0.51 | 45.0 | 4.03e-01 | 96.4% | 94.7% |
| 3372175 | 109.4.1.450 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 | 0.50 | 42.0 | 2.87e-01 | 100.0% | 43.2% |
D4
high
residues 351-447
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 43.0 | 4.63e-01 | 82.5% | 74.7% |
| 2es9A00 | 1.20.1290.30 | Mainly Alpha › Up-down Bundle › AhpD-like › | 0.66 | 50.0 | 5.04e-01 | 81.4% | 82.0% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.66 | 59.0 | 4.85e-01 | 97.9% | 66.1% |
| 3p5nA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.65 | 58.0 | 4.82e-01 | 97.9% | 67.3% |
| 4z7fB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.62 | 55.0 | 4.61e-01 | 97.9% | 63.1% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.62 | 57.0 | 4.72e-01 | 100.0% | 66.5% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 45.0 | 4.07e-01 | 78.4% | 67.9% |
| 3rlbA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.62 | 55.0 | 4.51e-01 | 97.9% | 64.8% |
| 7tvyA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.61 | 33.0 | 3.12e-01 | 95.9% | 43.1% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.60 | 45.0 | 3.68e-01 | 100.0% | 41.0% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 46.0 | 4.67e-01 | 86.6% | 91.8% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.58 | 42.0 | 3.49e-01 | 75.3% | 67.1% |
| 2zcxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 48.0 | 3.85e-01 | 93.8% | 66.3% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 47.0 | 4.47e-01 | 88.7% | 76.1% |
| 3bniB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 47.0 | 4.00e-01 | 93.8% | 63.2% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.57 | 50.0 | 3.94e-01 | 100.0% | 87.7% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.56 | 42.0 | 4.28e-01 | 79.4% | 80.9% |
| 7z7vE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.56 | 33.0 | 3.97e-01 | 86.6% | 95.0% |
| 1y89A00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 43.0 | 3.35e-01 | 99.0% | 35.4% |
| 2hs5A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.54 | 37.0 | 3.32e-01 | 70.1% | 87.9% |
| 4dvyP01 | 1.10.357.130 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.54 | 47.0 | 3.81e-01 | 100.0% | 82.7% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.53 | 44.0 | 3.63e-01 | 94.8% | 93.7% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 37.0 | 3.72e-01 | 77.3% | 93.1% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.51 | 40.0 | 3.58e-01 | 85.6% | 63.8% |
| 4j8sA00 | 1.25.40.840 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain | 0.51 | 43.0 | 3.64e-01 | 99.0% | 56.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3416186 | 3855.1.1.2 ↗ | alpha arrays › Serum amyloid A-1 protein › Serum amyloid A-1 protein › Serum amyloid A-1 protein › DM4_12 | 0.72 | 56.0 | 5.01e-01 | 82.5% | 61.9% |
| 3973928 | 604.39.1.27 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › MASE1 | 0.68 | 53.0 | 4.49e-01 | 85.6% | 56.5% |
| 3955270 | 191.1.1.24 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_34 | 0.68 | 54.0 | 4.51e-01 | 85.6% | 69.7% |
| 4264622 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.65 | 58.0 | 4.70e-01 | 97.9% | 61.7% |
| 4419510 | 604.12.1.3 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Thia_YuaJ | 0.64 | 57.0 | 4.55e-01 | 97.9% | 64.7% |
| 4940160 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.64 | 56.0 | 4.23e-01 | 100.0% | 58.8% |
| 3282320 | 1075.1.1.22 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › MlaE | 0.64 | 52.0 | 3.79e-01 | 88.7% | 54.7% |
| 4033804 | 604.12.1.51 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 5TM-5TMR_LYT | 0.63 | 55.0 | 4.41e-01 | 93.8% | 56.2% |
| 3654929 | 109.4.1.1440 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, TPR_24 | 0.62 | 47.0 | 3.05e-01 | 95.9% | 16.8% |
| 3570731 | 4973.1.1.6 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › UBN_AB | 0.62 | 49.0 | 5.12e-01 | 86.6% | 94.4% |
| 4989996 | 604.39.1.16 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ThiW | 0.62 | 55.0 | 4.73e-01 | 99.0% | 66.5% |
| 3942730 | 604.12.1.51 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 5TM-5TMR_LYT | 0.60 | 53.0 | 4.29e-01 | 97.9% | 56.3% |
| 3623710 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.60 | 48.0 | 4.72e-01 | 86.6% | 83.8% |
| 3986405 | 604.39.1.26 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › 5TM-5TMR_LYT | 0.60 | 53.0 | 4.25e-01 | 97.9% | 54.9% |
| 3244358 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.56 | 39.0 | 3.09e-01 | 73.2% | 46.7% |
| 3923962 | 109.4.1.390 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 | 0.56 | 48.0 | 3.86e-01 | 100.0% | 47.9% |
| 3649876 | 611.3.1.11 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › TOR1L1_N | 0.56 | 41.0 | 4.50e-01 | 100.0% | 100.0% |
| 3631656 | 109.4.1.1972 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N_2, RICTOR_M | 0.55 | 50.0 | 3.47e-01 | 100.0% | 35.0% |
| 4090200 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.55 | 42.0 | 3.84e-01 | 84.5% | 67.6% |
| 2651169 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 41.0 | 3.70e-01 | 78.4% | 72.3% |
| 4032631 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.55 | 40.0 | 3.13e-01 | 77.3% | 75.1% |
| 3212831 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.54 | 37.0 | 3.06e-01 | 71.1% | 58.4% |
| 3739620 | 168.1.1.1 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 | 0.53 | 46.0 | 3.59e-01 | 97.9% | 49.3% |
| 3853197 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.52 | 44.0 | 3.61e-01 | 100.0% | 50.0% |
| 3594203 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.51 | 36.0 | 3.60e-01 | 75.3% | 89.5% |
| 3576531 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.51 | 39.0 | 3.44e-01 | 90.7% | 54.5% |
| 4942306 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.51 | 36.0 | 3.51e-01 | 74.2% | 84.5% |
| 3290636 | 109.2.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like | 0.50 | 43.0 | 2.90e-01 | 100.0% | 31.7% |