Back to structures

JX006077.1__AFM10448.1__PIS_059__00059

Bact-Vir

JX006077.1__AFM10448.1__PIS_059__00059

Identity

Accession:
JX006077 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.72 56.0 5.90e-01 98.4% 94.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.67 55.0 5.14e-01 100.0% 71.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 5.10e-01 93.5% 100.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.66 57.0 5.41e-01 95.2% 95.9%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 56.0 5.19e-01 95.2% 91.1%
1sr4C00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 51.0 3.86e-01 90.3% 86.4%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 46.0 4.44e-01 98.4% 69.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.46e-01 98.4% 35.8%
4pswA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.70e-01 90.3% 74.4%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.58 50.0 4.15e-01 95.2% 56.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.78e-01 98.4% 52.0%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 42.0 3.69e-01 100.0% 52.1%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 42.0 3.64e-01 100.0% 50.5%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 42.0 3.73e-01 100.0% 52.6%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.57 51.0 4.51e-01 100.0% 74.2%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 41.0 3.63e-01 98.4% 53.3%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.00e-01 100.0% 63.0%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.56 44.0 4.12e-01 98.4% 68.8%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.54 39.0 3.47e-01 98.4% 51.1%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 4.00e-01 96.8% 65.0%
2zxdA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 3.57e-01 80.6% 95.6%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.54 39.0 3.66e-01 96.8% 61.0%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.54 46.0 4.18e-01 96.8% 96.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.50e-01 96.8% 96.9%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.49e-01 100.0% 97.1%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 3.83e-01 98.4% 82.7%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 3.61e-01 88.7% 93.1%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 4.22e-01 100.0% 92.7%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 43.0 3.63e-01 100.0% 63.9%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 46.0 4.06e-01 98.4% 67.8%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 4.22e-01 100.0% 93.3%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 3.82e-01 100.0% 85.4%
1pvtA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.52 41.0 2.92e-01 95.2% 89.2%
1oruA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 43.0 3.19e-01 100.0% 43.6%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 44.0 3.72e-01 98.4% 75.0%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.31e-01 93.5% 73.1%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 4.12e-01 91.9% 96.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3382832 4.1.1.302 beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.81 56.0 3.93e-01 96.8% 25.0%
3264806 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 57.0 6.30e-01 95.2% 98.0%
4280256 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.76 54.0 5.90e-01 96.8% 92.0%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 52.0 5.54e-01 95.2% 83.6%
3609597 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.74 55.0 5.57e-01 100.0% 81.7%
4116754 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 51.0 5.76e-01 93.5% 100.0%
3598284 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.71e-01 100.0% 89.1%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 51.0 5.57e-01 95.2% 92.0%
603 4.1.1.62 beta barrels › SH3 › SH3 › SH3 › DUF1811 0.72 55.0 5.91e-01 100.0% 96.2%
4053957 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 52.0 5.67e-01 95.2% 94.0%
4516378 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 51.0 4.97e-01 96.8% 67.1%
4583465 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 53.0 5.76e-01 96.8% 98.0%
4627221 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 51.0 5.04e-01 96.8% 72.3%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 52.0 5.01e-01 95.2% 70.0%
3906671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 41.0 5.10e-01 71.0% 92.5%
5071089 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 40.0 4.41e-01 72.6% 70.0%
4534931 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 51.0 4.83e-01 96.8% 64.0%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.16e-01 98.4% 72.9%
4668201 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 51.0 5.60e-01 96.8% 98.0%
4058919 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 49.0 5.32e-01 96.8% 96.0%
3720521 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.67 49.0 4.29e-01 79.0% 56.8%
3249327 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 48.0 4.17e-01 77.4% 86.7%
4938828 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.46e-01 100.0% 90.0%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 51.0 4.36e-01 100.0% 52.6%
4336500 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.66 48.0 5.01e-01 96.8% 87.3%
3315166 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.66 57.0 5.06e-01 100.0% 66.7%
2448699 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 49.0 4.74e-01 98.4% 72.1%
3975132 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 48.0 4.26e-01 98.4% 54.4%
3434219 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.65 56.0 4.90e-01 96.8% 71.6%
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.65 52.0 4.57e-01 98.4% 60.0%
4023996 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.65 46.0 3.33e-01 75.8% 37.8%
4930861 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 52.0 5.17e-01 100.0% 86.2%
3688824 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.64 48.0 4.19e-01 80.6% 57.9%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 46.0 5.08e-01 74.2% 100.0%
1175108 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 56.0 4.56e-01 96.8% 64.3%
4000635 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.64 45.0 3.27e-01 75.8% 37.2%
4025294 4.1.1.60 beta barrels › SH3 › SH3 › SH3 › YccV-like 0.64 57.0 4.94e-01 96.8% 81.1%
5017637 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.64 51.0 5.39e-01 100.0% 98.2%
3360171 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 57.0 4.37e-01 100.0% 55.8%
3204011 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 47.0 4.12e-01 98.4% 54.4%
3470175 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 55.0 5.07e-01 96.8% 90.0%
3829201 376.1.2.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.63 48.0 4.82e-01 83.9% 86.2%
4407497 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 46.0 4.58e-01 98.4% 75.4%
3902990 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.62 52.0 4.66e-01 98.4% 70.0%
3853598 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.61 51.0 4.81e-01 98.4% 78.8%
3941729 4.1.1.157 beta barrels › SH3 › SH3 › SH3 › YdfZ 0.61 50.0 5.06e-01 96.8% 96.7%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.68e-01 96.8% 67.8%
4033907 4.1.1.280 beta barrels › SH3 › SH3 › SH3 › DUF4176 0.60 51.0 4.48e-01 95.2% 65.3%
3821751 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.60 51.0 4.78e-01 100.0% 76.2%
3813762 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.60 46.0 4.61e-01 90.3% 100.0%
3931055 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.59 49.0 4.67e-01 98.4% 92.0%
3791752 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 5.04e-01 95.2% 90.8%
3782292 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.59 50.0 4.60e-01 93.5% 85.0%
3928760 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 49.0 3.08e-01 98.4% 23.9%
4972564 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 43.0 3.71e-01 98.4% 51.6%
4932128 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.57 42.0 3.80e-01 100.0% 57.6%
3265965 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 48.0 2.92e-01 98.4% 23.7%
1516038 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.57 42.0 3.69e-01 100.0% 52.1%
3386080 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.56 42.0 3.58e-01 98.4% 49.0%
3601330 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.99e-01 90.3% 62.4%
5015359 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.56 40.0 3.62e-01 98.4% 55.3%
4272870 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.56 41.0 3.59e-01 100.0% 51.6%
4235076 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 44.0 4.03e-01 98.4% 66.3%
4258307 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 47.0 3.12e-01 100.0% 30.4%
3829837 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.55 43.0 3.54e-01 100.0% 47.3%
3322961 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.54 39.0 3.51e-01 96.8% 53.3%
4026033 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.54 43.0 3.66e-01 98.4% 51.8%
3481480 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.54 40.0 3.49e-01 100.0% 50.0%
4028910 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.54 39.0 3.86e-01 77.4% 98.5%
862 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.53 45.0 4.22e-01 100.0% 92.7%
3504860 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.53 47.0 4.50e-01 98.4% 97.1%
4599667 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 41.0 3.14e-01 90.3% 97.1%
3890577 63.1.1.1 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.52 45.0 2.49e-01 100.0% 12.7%
4028190 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.52 42.0 3.18e-01 98.4% 73.1%
3515354 59.1.1.1 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RPC5 0.51 41.0 3.19e-01 91.9% 68.0%
3592578 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 42.0 2.54e-01 90.3% 64.9%
4012249 2007.1.4.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat 0.51 40.0 2.78e-01 91.9% 92.7%