←Back to structures

JX006077.1__AFM10453.1__PIS_064__00064

Bact-Vir

JX006077.1__AFM10453.1__PIS_064__00064

Identity

Accession:
JX006077 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saccharomonospora_phage_PIS_136

TaxID: 182851

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-111_126-230
PDB
Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00499__D174-378
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6nyyE01 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.76 70.0 6.78e-01 94.9% 100.0%
1ea0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 40.0 2.96e-01 76.6% 44.2%
3hjlA02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.54 30.0 3.54e-01 87.3% 78.3%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.87e-01 77.8% 36.0%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.53 46.0 3.87e-01 94.3% 83.1%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 42.0 3.47e-01 85.4% 60.9%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 33.0 3.69e-01 80.4% 85.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 23.0 3.11e-01 84.2% 82.9%
8befJ01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.50 30.0 2.99e-01 89.9% 54.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3904740 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.82 77.0 7.46e-01 98.1% 92.5%
4049068 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.81 78.0 6.84e-01 98.7% 88.4%
3614593 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.81 77.0 6.91e-01 98.1% 92.2%
3274429 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.81 77.0 6.81e-01 98.7% 84.2%
4218353 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.81 77.0 6.91e-01 98.7% 95.1%
4513212 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.81 77.0 6.53e-01 98.7% 81.3%
4346320 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.80 77.0 7.01e-01 99.4% 97.0%
4443096 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.80 77.0 6.92e-01 99.4% 95.6%
3330731 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.80 77.0 6.70e-01 99.4% 89.1%
4442740 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.80 76.0 6.73e-01 99.4% 91.2%
4928077 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.80 57.0 4.67e-01 73.4% 89.5%
4213610 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.80 76.0 7.18e-01 98.7% 96.7%
2872820 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.80 75.0 6.78e-01 98.7% 86.9%
None — 0.79 75.0 5.26e-01 98.7% 43.9%
2589766 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.79 74.0 6.32e-01 97.5% 78.7%
4571181 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.79 74.0 6.93e-01 96.8% 100.0%
5067204 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.79 75.0 6.93e-01 98.7% 96.3%
4387462 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.79 74.0 6.70e-01 98.7% 95.6%
3342412 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.78 74.0 6.46e-01 98.7% 91.8%
4968595 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.77 57.0 4.60e-01 74.7% 89.6%
4962954 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.77 56.0 4.52e-01 75.3% 87.6%
5066703 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.76 56.0 4.78e-01 75.3% 85.3%
5024588 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.76 56.0 4.62e-01 75.3% 77.8%
5063438 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.75 71.0 6.77e-01 98.7% 95.6%
5023340 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.75 54.0 4.87e-01 74.1% 92.4%
1807499 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.74 59.0 6.51e-01 84.8% 100.0%
3301199 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.72 66.0 5.67e-01 100.0% 85.3%
3281285 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.70 42.0 3.51e-01 73.4% 36.1%
4028408 7111.1.1.1 ↗ alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap 0.62 45.0 4.03e-01 74.1% 90.0%
3974411 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.58 41.0 3.83e-01 73.4% 74.6%
3486253 180.1.1.0 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.54 43.0 3.88e-01 82.9% 86.7%
3173603 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.54 47.0 3.56e-01 94.3% 78.1%
3218028 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.54 42.0 3.73e-01 83.5% 80.4%
4407699 604.12.1.51 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 5TM-5TMR_LYT 0.54 40.0 3.61e-01 77.2% 93.2%
4218099 304.55.1.1 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 0.53 38.0 4.08e-01 90.5% 86.7%
3720036 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 45.0 4.56e-01 100.0% 96.8%
4942036 1075.5.1.8 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 0.50 36.0 3.26e-01 72.8% 78.6%
135730 150.3.1.26 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL28A 0.50 36.0 3.73e-01 89.2% 77.8%
3171634 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.50 44.0 3.93e-01 96.8% 67.6%