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JX006077.1__AFM10456.1__PIS_067__00067

Bact-Vir

JX006077.1__AFM10456.1__PIS_067__00067

Identity

Accession:
JX006077 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.71 57.0 3.77e-01 88.7% 66.6%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.66 55.0 4.80e-01 93.0% 65.7%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.64 49.0 3.32e-01 83.1% 41.5%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 3.59e-01 78.9% 62.5%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 48.0 3.90e-01 81.7% 55.7%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.63 42.0 3.92e-01 73.2% 55.1%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 54.0 3.50e-01 100.0% 75.6%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 53.0 3.47e-01 100.0% 97.2%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 45.0 4.01e-01 76.1% 77.8%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 48.0 3.18e-01 87.3% 46.8%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 46.0 3.77e-01 80.3% 55.7%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 39.0 3.55e-01 73.2% 49.5%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 44.0 3.07e-01 81.7% 85.3%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.47e-01 76.1% 60.3%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 52.0 3.39e-01 100.0% 96.7%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 45.0 3.97e-01 84.5% 68.4%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 4.10e-01 80.3% 75.8%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.87e-01 80.3% 69.2%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 52.0 3.36e-01 100.0% 82.3%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.15e-01 100.0% 68.5%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.59 48.0 4.18e-01 94.4% 61.5%
3fe4B00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.59 50.0 3.51e-01 97.2% 64.5%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.58 49.0 3.33e-01 91.5% 56.9%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.58 47.0 4.19e-01 94.4% 87.3%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.57 49.0 4.70e-01 98.6% 86.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.57 46.0 3.61e-01 88.7% 68.2%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.57 40.0 4.04e-01 76.1% 83.8%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.57 46.0 3.83e-01 91.5% 55.6%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 48.0 3.27e-01 100.0% 80.7%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 46.0 3.92e-01 91.5% 78.2%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 37.0 3.62e-01 73.2% 60.5%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 47.0 3.13e-01 100.0% 76.6%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.56 42.0 3.49e-01 80.3% 58.7%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 49.0 4.33e-01 100.0% 69.5%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 43.0 3.21e-01 83.1% 44.0%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 4.10e-01 81.7% 83.3%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 4.23e-01 95.8% 89.9%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.54 44.0 3.70e-01 94.4% 85.9%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 48.0 4.19e-01 98.6% 70.6%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 41.0 3.57e-01 87.3% 72.4%
1hn0A03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 43.0 2.98e-01 91.5% 91.8%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 36.0 3.54e-01 70.4% 90.8%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 4.07e-01 100.0% 78.4%
2ba1D01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 44.0 3.15e-01 97.2% 71.7%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.41e-01 100.0% 75.3%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 45.0 3.41e-01 100.0% 42.0%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 42.0 3.69e-01 98.6% 69.2%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.75e-01 95.8% 85.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937423 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 53.0 4.99e-01 87.3% 68.2%
3605340 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 53.0 3.07e-01 85.9% 25.2%
3602276 881.4.1.2 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.67 46.0 3.75e-01 84.5% 37.8%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 51.0 3.46e-01 88.7% 22.7%
3829668 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 56.0 3.16e-01 97.2% 9.4%
3244934 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 54.0 3.50e-01 91.5% 22.8%
3361876 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.65 56.0 4.72e-01 98.6% 65.6%
3511356 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.65 46.0 4.04e-01 74.6% 69.5%
3775139 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.64 54.0 4.66e-01 97.2% 69.2%
3618512 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.64 52.0 3.53e-01 90.1% 42.1%
3945059 9.1.1.6 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.64 49.0 4.30e-01 83.1% 74.3%
3229190 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 54.0 3.51e-01 100.0% 90.3%
3700776 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 41.0 4.17e-01 74.6% 68.6%
4288795 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.62 48.0 3.09e-01 87.3% 32.6%
4347893 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.62 47.0 3.12e-01 87.3% 38.8%
3546306 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 41.0 3.77e-01 70.4% 75.8%
7390 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.60 46.0 3.09e-01 81.7% 56.2%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.60 46.0 4.43e-01 81.7% 80.0%
3593349 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 51.0 3.51e-01 100.0% 94.4%
3222725 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 47.0 3.12e-01 90.1% 20.3%
3630631 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.60 47.0 2.76e-01 88.7% 17.5%
3538619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 44.0 3.66e-01 78.9% 64.6%
1866896 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.60 47.0 3.72e-01 87.3% 78.6%
4124524 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.60 49.0 3.60e-01 93.0% 41.5%
3220737 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.60 46.0 3.12e-01 84.5% 22.9%
3468658 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 50.0 3.40e-01 98.6% 85.7%
3563385 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 46.0 3.00e-01 88.7% 28.2%
3240324 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 47.0 3.63e-01 88.7% 37.7%
3959017 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 43.0 2.66e-01 77.5% 33.2%
3185010 12.3.1.28 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_92N 0.59 44.0 2.99e-01 80.3% 65.8%
3440964 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 51.0 3.34e-01 97.2% 86.7%
185792 9.17.1.1 beta barrels › Lipocalins/Streptavidin › Lipoprotein YedD › Lipoprotein YedD › YedD 0.59 48.0 4.18e-01 94.4% 61.5%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.59 48.0 4.05e-01 91.5% 94.4%
4954638 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.58 50.0 4.38e-01 100.0% 74.6%
3884108 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.58 44.0 3.01e-01 83.1% 58.5%
4666231 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.57 52.0 3.84e-01 100.0% 65.1%
3945385 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.57 44.0 3.29e-01 83.1% 37.2%
3600529 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 48.0 4.30e-01 100.0% 87.6%
223484 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 49.0 4.33e-01 100.0% 69.5%
3435896 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 48.0 3.20e-01 100.0% 89.8%
4427813 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.55 49.0 4.32e-01 100.0% 72.4%
3219318 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 45.0 3.04e-01 93.0% 25.3%
4797890 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.55 44.0 4.17e-01 88.7% 76.5%
1275015 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.55 41.0 3.67e-01 80.3% 72.5%
3225336 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 43.0 3.43e-01 85.9% 77.2%
4033928 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.53 45.0 3.86e-01 100.0% 67.2%
4218376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.53 45.0 4.12e-01 100.0% 75.0%
4479376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.53 46.0 3.98e-01 100.0% 64.3%
4031135 6043.1.1.3 a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.52 37.0 3.54e-01 74.6% 72.9%
4269649 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.52 45.0 3.96e-01 100.0% 66.4%
3970136 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.52 45.0 4.02e-01 100.0% 69.5%
3724681 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.43e-01 80.3% 56.2%
4979253 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.52 44.0 3.91e-01 100.0% 71.8%
3810133 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.52 43.0 3.07e-01 100.0% 89.8%
4336238 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.52 44.0 4.02e-01 100.0% 75.0%
3630423 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 38.0 3.61e-01 80.3% 83.5%
4003932 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 43.0 3.72e-01 98.6% 90.8%