←Back to structures

JX006077.1__AFM10460.1__PIS_071__00071

Bact-Vir

JX006077.1__AFM10460.1__PIS_071__00071

Identity

Accession:
JX006077 ↗
Kingdom:
phage

Quality

70.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saccharomonospora_phage_PIS_136

TaxID: 182851

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 163-253
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hb5A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 43.0 3.68e-01 100.0% 44.0%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 43.0 3.37e-01 84.6% 34.0%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 42.0 3.63e-01 100.0% 44.1%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 46.0 3.96e-01 98.9% 50.3%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.59 50.0 4.30e-01 95.6% 88.7%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 37.0 3.74e-01 93.4% 63.0%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 47.0 3.75e-01 100.0% 43.1%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 28.0 3.69e-01 74.7% 93.2%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.56 44.0 3.31e-01 100.0% 33.2%
4bnqB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.56 39.0 3.07e-01 98.9% 33.9%
3gveA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 47.0 3.29e-01 97.8% 90.1%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.55 33.0 3.62e-01 94.5% 74.6%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.55 43.0 3.19e-01 98.9% 32.6%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.75e-01 71.4% 76.3%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.54 43.0 4.16e-01 98.9% 75.7%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.53 43.0 3.02e-01 93.4% 61.7%
2lruA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 4.21e-01 98.9% 81.6%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.52 44.0 3.49e-01 95.6% 86.7%
2yptA02 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.52 40.0 4.19e-01 84.6% 92.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 29.0 3.01e-01 78.0% 55.6%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.33e-01 100.0% 94.3%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.30e-01 100.0% 97.6%
4d9uA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.90e-01 85.7% 83.0%
6r2nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.83e-01 98.9% 95.7%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.50 35.0 3.73e-01 85.7% 84.8%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 4.18e-01 97.8% 93.6%
3b34A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.50 42.0 4.16e-01 98.9% 99.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4161288 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.76 52.0 4.53e-01 98.9% 47.4%
4216155 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.76 53.0 4.77e-01 98.9% 54.2%
4351187 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 52.0 4.55e-01 98.9% 51.1%
4606103 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.71 49.0 4.46e-01 98.9% 54.2%
5035818 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.71 49.0 4.56e-01 98.9% 57.4%
4927878 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.70 47.0 4.44e-01 96.7% 57.3%
4386515 330.1.1.30 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF27148 0.66 42.0 4.72e-01 93.4% 89.2%
3550395 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.64 40.0 4.09e-01 93.4% 64.4%
4015125 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 40.0 4.33e-01 93.4% 77.3%
3390831 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.63 40.0 4.22e-01 93.4% 72.5%
4505130 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.62 52.0 4.69e-01 98.9% 65.6%
3452851 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.62 46.0 4.05e-01 100.0% 52.6%
3740684 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 39.0 4.16e-01 93.4% 72.5%
3840019 2484.1.1.261 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27038 0.62 43.0 3.68e-01 98.9% 44.0%
5070100 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.61 46.0 3.47e-01 98.9% 32.7%
3982525 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 43.0 4.28e-01 100.0% 70.5%
3269706 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 4.89e-01 100.0% 91.3%
3460010 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.61 45.0 3.84e-01 100.0% 48.0%
4969580 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.61 46.0 3.48e-01 98.9% 33.6%
3784375 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 39.0 4.10e-01 93.4% 73.8%
4253671 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.60 54.0 4.47e-01 98.9% 57.4%
4072052 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.60 39.0 4.09e-01 94.5% 73.8%
4944954 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.60 44.0 3.41e-01 98.9% 33.5%
4375978 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 42.0 4.07e-01 100.0% 64.8%
1420619 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.58 37.0 3.74e-01 93.4% 63.0%
4114495 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.58 43.0 3.34e-01 100.0% 34.3%
4948163 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.58 43.0 3.33e-01 100.0% 33.2%
5069545 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.57 42.0 3.27e-01 98.9% 35.1%
4548043 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.57 41.0 3.19e-01 98.9% 32.0%
3496171 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.56 40.0 4.08e-01 96.7% 77.8%
5017856 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 3.35e-01 97.8% 31.5%
3718117 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 46.0 3.27e-01 98.9% 30.2%
3177409 330.1.1.13 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Mgm101p 0.55 40.0 3.36e-01 93.4% 43.0%
3742583 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 42.0 3.18e-01 98.9% 32.1%
4152191 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 40.0 3.07e-01 100.0% 30.6%
4368803 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.54 47.0 3.82e-01 98.9% 92.8%
5080441 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.53 46.0 4.04e-01 93.4% 65.4%
4956532 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.53 47.0 3.79e-01 100.0% 94.4%
3494172 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.53 40.0 3.35e-01 81.3% 91.3%
3518490 2.1.1.110 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA2DBD_OB2 0.53 39.0 3.65e-01 79.1% 82.6%
3623874 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.52 40.0 3.52e-01 81.3% 93.3%
3706267 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 45.0 3.63e-01 96.7% 69.7%
5047088 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.51 44.0 3.33e-01 95.6% 44.5%
4180235 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.51 33.0 3.44e-01 94.5% 73.8%
3610888 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 36.0 3.28e-01 76.9% 76.9%
4289516 2484.1.1.223 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27036 0.50 43.0 3.42e-01 100.0% 48.1%