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JX006077.1__AFM10505.1__PIS_118__00118

Bact-Vir

JX006077.1__AFM10505.1__PIS_118__00118

Identity

Accession:
JX006077 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saccharomonospora_phage_PIS_136

TaxID: 182851

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-158
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01135.26 best PCMT 30.4 4.70e-07 65.3% 27.6%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.89 68.0 5.61e-01 100.0% 48.3%
1jg1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.89 69.0 5.58e-01 100.0% 47.0%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.86 64.0 5.10e-01 96.9% 42.9%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.86 69.0 5.76e-01 99.2% 52.2%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.84 65.0 5.21e-01 100.0% 45.1%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.79 39.0 3.22e-01 85.0% 29.0%
3mb5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.78 39.0 3.33e-01 85.0% 31.6%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.78 41.0 3.52e-01 100.0% 34.4%
2bvfA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 31.0 3.04e-01 96.1% 47.5%
1w1oA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 30.0 3.01e-01 96.1% 55.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385678 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.91 68.0 5.60e-01 100.0% 47.5%
None — 0.90 68.0 5.54e-01 99.2% 46.0%
4284604 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.89 69.0 5.49e-01 100.0% 43.9%
None — 0.89 68.0 5.55e-01 100.0% 46.5%
None — 0.89 70.0 5.54e-01 100.0% 44.7%
None — 0.89 69.0 5.53e-01 100.0% 45.9%
4862509 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.88 68.0 6.01e-01 100.0% 58.5%
None — 0.88 67.0 5.45e-01 100.0% 46.0%
3964956 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.88 67.0 5.46e-01 99.2% 46.5%
4496894 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.88 69.0 5.44e-01 100.0% 43.8%
None — 0.87 68.0 5.59e-01 99.2% 48.6%
4639069 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.87 63.0 5.25e-01 96.1% 47.0%
3508672 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.87 65.0 5.22e-01 98.4% 43.6%
9354 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.86 69.0 5.64e-01 99.2% 49.3%
3426336 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.85 67.0 6.56e-01 100.0% 76.3%
5070318 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.85 67.0 5.54e-01 98.4% 49.5%
4932660 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.84 64.0 5.33e-01 96.9% 48.8%
None — 0.84 70.0 5.56e-01 100.0% 47.8%
5052770 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.83 70.0 5.55e-01 100.0% 46.7%
3236716 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.80 66.0 4.59e-01 100.0% 29.7%
3594360 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.72 66.0 5.10e-01 100.0% 47.6%
3953335 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.52 30.0 3.23e-01 95.3% 63.6%
2969764 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.51 27.0 3.39e-01 87.4% 87.8%