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JX006077.1__AFM10508.1__PIS_121__00121

Bact-Vir

JX006077.1__AFM10508.1__PIS_121__00121

Identity

Accession:
JX006077 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-91
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16827.11 best zf-HC3 67.7 1.20e-18 75.0% 100.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c3iA04 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.55 45.0 3.70e-01 100.0% 48.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
146963 3185.1.1.1 a+b two layers › uncharacterized protein Svir_20580 › uncharacterized protein Svir_20580 › uncharacterized protein Svir_20580 › zf-HC3 0.90 76.0 6.94e-01 88.6% 70.3%
4933326 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.63 37.0 3.79e-01 89.8% 58.0%
4928472 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.61 36.0 3.77e-01 89.8% 63.7%
3734823 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.55 46.0 3.26e-01 93.2% 62.1%
3232791 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.52 38.0 3.43e-01 79.5% 94.6%
4403559 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.52 41.0 3.03e-01 87.5% 62.8%
2895133 173.1.1.0 alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like 0.51 35.0 3.57e-01 95.5% 72.6%