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JX042579.1__AFN37796.1__MACNCHEESE_6__00006

Bact-Vir

JX042579.1__AFN37796.1__MACNCHEESE_6__00006

Identity

Accession:
JX042579 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Keshuvirus› Mycobacterium_phage_MacnCheese

TaxID: 2927982

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-53
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.71 52.0 5.20e-01 100.0% 79.2%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.63 44.0 4.03e-01 83.3% 54.4%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 45.0 2.79e-01 100.0% 13.3%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 46.0 3.60e-01 91.7% 42.2%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.58 41.0 3.87e-01 77.1% 72.9%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 47.0 3.68e-01 95.8% 42.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 3.16e-01 91.7% 31.3%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.57 47.0 3.08e-01 100.0% 46.1%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 37.0 2.83e-01 95.8% 24.4%
2f7sA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.99e-01 85.4% 34.1%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 38.0 3.37e-01 89.6% 45.9%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.57 46.0 3.37e-01 97.9% 76.5%
3biqA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.56 45.0 2.90e-01 95.8% 59.5%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 35.0 2.72e-01 87.5% 25.0%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.56 42.0 2.52e-01 95.8% 56.7%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.56 43.0 2.55e-01 97.9% 55.6%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 44.0 2.84e-01 97.9% 69.7%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 2.74e-01 97.9% 40.1%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.53 38.0 3.09e-01 89.6% 38.1%
5fl7G02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.53 42.0 2.95e-01 100.0% 77.2%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.49e-01 95.8% 19.1%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 39.0 3.32e-01 97.9% 45.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 37.0 2.96e-01 85.4% 32.5%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.51e-01 93.8% 88.8%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.51 40.0 3.61e-01 91.7% 62.5%
1i5pA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.50 38.0 2.71e-01 93.8% 36.4%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 39.0 2.51e-01 91.7% 57.3%
6tdxG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.50 40.0 2.73e-01 95.8% 57.5%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.50 35.0 3.35e-01 87.5% 60.6%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.50 36.0 3.30e-01 87.5% 54.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018976 295.1.1.53 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.71 54.0 5.08e-01 97.9% 66.7%
3706741 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.70 45.0 2.88e-01 97.9% 13.1%
3570520 306.10.1.4 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › KCTD11_21_C 0.67 51.0 3.73e-01 87.5% 51.0%
3179489 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 48.0 3.57e-01 83.3% 31.4%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.65 45.0 4.42e-01 87.5% 65.5%
5039534 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 41.0 4.32e-01 79.2% 75.0%
5002376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 3.70e-01 87.5% 38.1%
4981888 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 41.0 3.47e-01 89.6% 41.2%
3954143 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 48.0 3.28e-01 89.6% 35.4%
4013535 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.59 46.0 2.75e-01 87.5% 18.3%
3644345 11.1.1.47 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.59 37.0 3.22e-01 79.2% 36.3%
4927342 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 3.40e-01 81.2% 38.9%
3494714 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 40.0 3.62e-01 91.7% 51.4%
3687001 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 48.0 3.51e-01 100.0% 32.1%
3965228 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.55e-01 87.5% 42.1%
1033457 3218.1.1.0 ↗ a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain 0.57 41.0 3.94e-01 79.2% 79.3%
3441990 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 43.0 2.71e-01 100.0% 13.0%
3998297 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 42.0 3.07e-01 93.8% 26.7%
4618808 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 42.0 2.70e-01 91.7% 40.7%
3259208 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 40.0 3.15e-01 89.6% 33.1%
5018703 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.54 39.0 3.34e-01 81.2% 51.1%
3479321 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.53 42.0 2.62e-01 100.0% 28.1%
3280088 223.1.1.17 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs 0.53 39.0 3.25e-01 95.8% 41.0%
4182876 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.53 37.0 2.56e-01 77.1% 20.5%
4378403 210.1.2.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.52 40.0 2.27e-01 95.8% 33.6%
3600524 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 36.0 2.18e-01 77.1% 37.0%
3942344 2485.3.1.19 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.52 41.0 2.64e-01 100.0% 57.1%
4956036 169.1.1.3 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_N 0.52 41.0 2.39e-01 100.0% 37.9%
3577490 3218.1.1.2 ↗ a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › wnt 0.51 36.0 3.11e-01 81.2% 92.6%
3733936 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.51 36.0 2.64e-01 83.3% 73.9%
3631820 298.1.1.6 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C 0.51 43.0 2.73e-01 100.0% 60.4%
3962258 206.1.3.27 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CP_ATPgrasp_2 0.51 41.0 3.06e-01 100.0% 32.7%
3702518 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.24e-01 95.8% 98.2%
3450430 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 37.0 2.64e-01 93.8% 22.9%
5059744 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 35.0 2.99e-01 97.9% 40.0%
3684690 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.51 38.0 3.33e-01 93.8% 62.2%
3991048 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.51 38.0 3.24e-01 91.7% 46.7%
3564207 304.55.2.4 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › NID 0.51 42.0 3.18e-01 97.9% 38.4%
3428777 812.1.1.0 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.51 39.0 3.95e-01 93.8% 86.0%
3257563 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.50 37.0 3.15e-01 91.7% 43.2%
5043427 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.50 34.0 2.70e-01 70.8% 38.4%