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JX094500.1__AFO71385.1__CR5_165__00165

Bact-Vir

JX094500.1__AFO71385.1__CR5_165__00165

Identity

Accession:
JX094500 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Derbicusvirus› Cronobacter_phage_CR5

TaxID: 1195085

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-128
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bg1A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 48.0 3.60e-01 85.2% 84.9%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.57 36.0 4.00e-01 89.1% 81.6%
2p4pA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 35.0 4.14e-01 95.3% 97.6%
2r2zA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 34.0 4.10e-01 81.2% 95.2%
2cxhA01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.54 46.0 4.13e-01 91.4% 99.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 29.0 3.85e-01 87.5% 95.8%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 3.51e-01 96.1% 61.1%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 47.0 4.21e-01 95.3% 73.6%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 45.0 3.28e-01 96.1% 64.4%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 31.0 3.69e-01 81.2% 93.8%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 40.0 3.65e-01 82.8% 83.0%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 31.0 3.71e-01 81.2% 92.9%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 36.0 3.29e-01 73.4% 77.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975425 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.69 40.0 4.34e-01 72.7% 68.6%
3212591 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.68 39.0 4.61e-01 96.1% 81.1%
3503257 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.62 36.0 4.05e-01 98.4% 73.5%
5069282 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.62 30.0 3.33e-01 82.8% 57.0%
3408303 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 26.0 3.21e-01 93.8% 62.5%
4996975 244.2.1.7 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.59 28.0 3.08e-01 82.8% 52.7%
3988102 222.1.1.16 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE_C 0.58 38.0 4.19e-01 92.2% 83.0%
3345277 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.58 48.0 3.42e-01 89.1% 72.8%
3402001 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 30.0 3.42e-01 82.8% 71.1%
4005987 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 4.68e-01 100.0% 93.6%
3245603 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 39.0 4.23e-01 93.8% 89.1%
4510748 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.51 36.0 3.30e-01 73.4% 77.7%
3698521 868.1.1.2 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.51 37.0 3.11e-01 75.0% 78.9%
169012 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.51 40.0 3.62e-01 82.8% 80.6%
4985112 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.50 36.0 3.19e-01 72.7% 76.7%
D2 high residues 143-286
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 28.0 4.25e-01 76.4% 96.7%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.60 36.0 4.25e-01 89.6% 91.2%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.60 34.0 4.09e-01 89.6% 90.5%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 28.0 3.14e-01 70.8% 54.9%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.55 43.0 4.35e-01 97.9% 80.8%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 34.0 3.72e-01 74.3% 79.2%
1cd9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.94e-01 88.9% 94.9%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.94e-01 91.7% 98.9%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.98e-01 84.7% 99.0%
3kg8A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 4.25e-01 100.0% 93.8%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 25.0 3.36e-01 73.6% 100.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971209 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.63 35.0 3.92e-01 90.3% 70.0%
3243080 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.62 32.0 3.66e-01 74.3% 67.0%
4655950 274.1.1.4 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.60 35.0 3.82e-01 89.6% 68.7%
4025486 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.58 36.0 3.74e-01 100.0% 65.0%
4862964 3675.1.1.1 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.57 33.0 3.10e-01 91.7% 43.3%
4047043 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 43.0 4.19e-01 99.3% 81.3%
3277920 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.50 40.0 4.20e-01 100.0% 93.8%
D3 high residues 297-363
PDB
Domain cluster: rep: MW812338.1__QVW54954.1__pEaSNUABM4_00201__00189__D175-229