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JX100810.1__AFU87987.1__CcrColossus_gp117__00116

Bact-Vir

JX100810.1__AFU87987.1__CcrColossus_gp117__00116

Identity

Accession:
JX100810 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrColossus

TaxID: 1211640

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-121
PDB
Domain cluster: rep: OP712474.1__WBF76922.1__PSV3_00220__00021__D2-82
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27119.1 best Phage_YdaY 61.5 9.60e-17 80.2% 80.0%
D2 high residues 124-259
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23812.2 best Phage_TAC_18 41.4 1.60e-10 61.8% 78.8%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 29.0 4.11e-01 81.6% 83.6%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 32.0 4.13e-01 84.6% 80.5%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 4.51e-01 73.5% 95.6%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.57 39.0 4.37e-01 85.3% 91.3%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 31.0 3.56e-01 83.1% 71.6%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 27.0 3.63e-01 75.0% 91.0%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 32.0 3.27e-01 88.2% 58.3%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 36.0 4.08e-01 88.2% 88.7%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.52 42.0 3.41e-01 95.6% 45.7%
1g2nA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 41.0 3.35e-01 83.8% 55.3%
3ieeA02 1.20.58.820 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 0.51 29.0 3.27e-01 83.1% 71.8%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.51 36.0 3.41e-01 73.5% 80.8%
6lccA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 40.0 3.06e-01 86.8% 89.5%
4p1eA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.51 41.0 3.19e-01 86.0% 84.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4107263 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.67 43.0 4.15e-01 94.9% 58.0%
3853979 101.1.2.573 ↗ alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel 0.60 33.0 3.39e-01 80.1% 55.4%
3727274 3758.1.1.69 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › PF30554 0.59 36.0 2.94e-01 86.0% 34.9%
3731907 101.1.17.23 ↗ alpha arrays › HTH › HTH › FF domain › PF26803 0.57 42.0 4.77e-01 80.1% 100.0%
3276289 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 40.0 3.38e-01 72.1% 96.9%
3596024 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.55 48.0 3.94e-01 94.9% 89.0%
4994040 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.55 33.0 3.80e-01 84.6% 81.0%
3727157 611.7.1.0 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.54 30.0 3.15e-01 83.1% 59.2%
4169661 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.53 34.0 2.97e-01 83.8% 43.5%
3677519 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.53 38.0 3.24e-01 73.5% 67.4%
3215086 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.53 42.0 3.49e-01 84.6% 55.8%
4953234 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.51 47.0 3.53e-01 100.0% 79.1%
3931312 601.1.2.6 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B 0.51 30.0 3.20e-01 83.1% 65.8%