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JX100810.1__AFU88171.1__CcrColossus_gp301__00301

Bact-Vir

JX100810.1__AFU88171.1__CcrColossus_gp301__00301

Identity

Accession:
JX100810 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrColossus

TaxID: 1211640

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 82-125
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.80 64.0 5.33e-01 97.7% 50.6%
1eg3A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.72 61.0 4.84e-01 97.7% 47.3%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.71 59.0 4.49e-01 100.0% 54.4%
2pusA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 49.0 4.65e-01 93.2% 71.7%
6whpA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.63 54.0 3.35e-01 100.0% 71.1%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 53.0 4.92e-01 100.0% 80.7%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.72e-01 79.5% 49.2%
1e94E02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 44.0 3.59e-01 93.2% 44.4%
2xauA04 1.10.10.2130 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DEAH helicase family, winged-helix domain 0.52 35.0 3.46e-01 70.5% 80.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740910 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.80 70.0 6.53e-01 100.0% 80.0%
3707211 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 63.0 5.50e-01 97.7% 62.9%
3550353 3602.1.1.0 ↗ alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.75 57.0 4.95e-01 84.1% 55.4%
3406437 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 4.62e-01 97.7% 40.0%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.73 65.0 4.14e-01 100.0% 39.0%
4016151 2003.1.3.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like 0.73 53.0 3.17e-01 88.6% 11.5%
3681855 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.72 61.0 3.53e-01 100.0% 10.2%
4999065 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.71 62.0 4.22e-01 100.0% 53.5%
3616126 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 51.0 3.07e-01 86.4% 11.1%
3595507 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.68 57.0 4.16e-01 100.0% 34.8%
4011551 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 47.0 4.41e-01 79.5% 61.8%
3375081 101.1.11.87 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF7890 0.65 48.0 4.79e-01 84.1% 80.0%
3510392 6157.1.1.1 ↗ alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP 0.65 56.0 4.21e-01 100.0% 43.6%
3372933 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.65 53.0 3.27e-01 100.0% 88.5%
3366426 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.62 52.0 4.95e-01 100.0% 83.6%
3171363 605.8.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › PF27894 0.62 56.0 5.18e-01 100.0% 83.6%
5023752 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.60 52.0 4.34e-01 97.7% 58.7%
3218541 109.7.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › RLL 0.59 53.0 4.12e-01 97.7% 70.0%
3643597 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 46.0 4.33e-01 93.2% 70.9%
5072673 2007.1.5.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.59 45.0 2.95e-01 100.0% 48.5%
5031737 2002.1.1.74 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.58 45.0 2.67e-01 86.4% 100.0%
3966446 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 3.02e-01 93.2% 16.4%
3736214 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.58 47.0 3.45e-01 100.0% 33.3%
3581100 5.1.3.170 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd 0.54 44.0 2.85e-01 95.5% 39.6%