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JX100810.1__AFU88183.1__CcrColossus_gp313__00313

Bact-Vir

JX100810.1__AFU88183.1__CcrColossus_gp313__00313

Identity

Accession:
JX100810 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrColossus

TaxID: 1211640

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-61
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cl8A00 3.40.580.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A 0.66 55.0 3.67e-01 95.1% 80.1%
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.64 49.0 4.76e-01 86.9% 73.9%
2ynmD01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.62 53.0 4.11e-01 100.0% 49.0%
1sg4A01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.62 50.0 3.60e-01 95.1% 83.3%
6dvsA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.61 45.0 3.17e-01 95.1% 23.3%
4cgsA00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.59 52.0 3.83e-01 100.0% 84.5%
1y1lA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 50.0 4.01e-01 96.7% 96.8%
3i0zA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.57 49.0 3.55e-01 100.0% 33.5%
3vn5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 42.0 2.97e-01 80.3% 71.5%
2cb0A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 44.0 3.33e-01 88.5% 57.2%
5tshA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.85e-01 91.8% 34.8%
4mcjG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 38.0 2.92e-01 75.4% 57.8%
1j3bB01 3.40.449.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 0.53 45.0 3.24e-01 98.4% 100.0%
4ki9A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 43.0 3.34e-01 100.0% 38.2%
3t38A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 46.0 3.67e-01 100.0% 93.0%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 43.0 3.27e-01 96.7% 45.5%
3rh0A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 43.0 3.45e-01 93.4% 95.3%
4ntdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 3.28e-01 85.2% 80.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588507 2007.2.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like 0.77 58.0 4.97e-01 98.4% 51.6%
5010735 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 53.0 4.11e-01 93.4% 48.3%
3815375 5069.1.3.17 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF679 0.65 52.0 3.95e-01 86.9% 54.3%
3684982 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.63 50.0 3.90e-01 88.5% 39.3%
4888550 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.63 51.0 4.99e-01 98.4% 82.1%
4936770 7518.1.1.3 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DACZ_N 0.63 47.0 3.76e-01 82.0% 44.0%
4989134 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 46.0 3.75e-01 80.3% 46.1%
4992752 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.61 52.0 3.84e-01 98.4% 39.9%
4995496 2004.1.1.103 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sua5_C 0.61 47.0 4.09e-01 91.8% 54.0%
5029493 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.59 51.0 3.67e-01 98.4% 38.4%
4984557 7512.1.1.51 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_2 0.59 51.0 3.84e-01 96.7% 42.0%
3481340 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.59 52.0 3.80e-01 100.0% 81.8%
3781860 2007.2.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 0.58 47.0 3.54e-01 98.4% 86.5%
3169410 109.4.1.819 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec8_C 0.55 43.0 2.44e-01 93.4% 7.0%
5003111 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.54 44.0 3.19e-01 100.0% 67.4%
5070661 2488.1.1.8 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.54 41.0 2.83e-01 82.0% 100.0%
4159956 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.54 40.0 2.57e-01 83.6% 15.6%
4990295 2003.1.1.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 0.54 38.0 2.95e-01 80.3% 32.1%
2671563 3191.1.1.1 ↗ alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR 0.54 39.0 3.45e-01 78.7% 70.7%
5080764 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.54 41.0 3.42e-01 86.9% 76.7%
3659738 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.52 38.0 3.35e-01 88.5% 49.5%
5059552 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.52 42.0 2.74e-01 100.0% 83.1%