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JX100810.1__AFU88252.1__CcrColossus_gp382__00382

Bact-Vir

JX100810.1__AFU88252.1__CcrColossus_gp382__00382

Identity

Accession:
JX100810 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrColossus

TaxID: 1211640

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-88
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.70 38.0 4.19e-01 86.7% 64.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.73e-01 86.7% 71.4%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 39.0 3.44e-01 94.7% 44.9%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 3.86e-01 86.7% 47.7%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 34.0 3.26e-01 86.7% 46.2%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 3.51e-01 86.7% 41.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.86e-01 86.7% 64.5%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 39.0 3.25e-01 86.7% 42.7%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.76e-01 100.0% 70.5%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.36e-01 74.7% 80.3%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 38.0 3.19e-01 88.0% 41.4%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.57e-01 84.0% 71.4%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 32.0 3.60e-01 97.3% 75.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.96e-01 90.7% 83.1%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.69e-01 90.7% 74.2%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.52 42.0 3.68e-01 97.3% 57.3%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.67e-01 94.7% 67.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.54e-01 86.7% 85.5%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.50 37.0 3.53e-01 81.3% 65.2%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.10e-01 78.7% 93.2%
1a9xA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 42.0 3.22e-01 100.0% 78.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4298930 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.64 43.0 4.04e-01 92.0% 56.7%
3498392 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 4.35e-01 88.0% 74.8%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.50e-01 85.3% 80.0%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.15e-01 86.7% 64.4%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 47.0 4.06e-01 88.0% 53.2%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.58 46.0 3.96e-01 86.7% 54.2%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.97e-01 86.7% 76.5%
3283078 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 41.0 3.31e-01 74.7% 84.6%
4019128 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 40.0 3.04e-01 74.7% 80.0%
5032977 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.57e-01 93.3% 88.7%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 42.0 3.98e-01 86.7% 65.3%
4028425 220.1.1.286 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 0.55 44.0 3.81e-01 92.0% 72.3%
3783184 2484.1.1.212 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH 0.55 41.0 3.33e-01 78.7% 55.0%
3643457 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.55 42.0 3.20e-01 84.0% 69.2%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 41.0 3.71e-01 89.3% 57.4%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.55 44.0 4.34e-01 96.0% 85.0%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 39.0 3.77e-01 94.7% 65.6%
3779701 912.1.1.8 ↗ few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › CIMR 0.54 41.0 2.59e-01 85.3% 26.0%
3167531 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 44.0 3.71e-01 93.3% 68.9%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 38.0 3.70e-01 89.3% 67.1%
4073608 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.53 42.0 3.23e-01 88.0% 93.3%
3505303 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 3.61e-01 80.0% 80.0%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.03e-01 100.0% 29.8%
3433338 5.1.5.86 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 0.52 42.0 2.78e-01 88.0% 96.6%
3889864 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 32.0 3.56e-01 92.0% 81.8%
3614906 4.26.1.8 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.52 39.0 3.99e-01 81.3% 98.6%
3288253 1.1.13.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 0.51 39.0 3.70e-01 82.7% 96.7%
3518948 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.51 37.0 3.63e-01 78.7% 77.6%
1107292 5.1.4.53 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF4784 0.51 44.0 2.96e-01 98.7% 24.2%
3587744 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.51 38.0 3.25e-01 85.3% 97.1%
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 38.0 3.35e-01 86.7% 72.4%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.50 43.0 4.02e-01 97.3% 84.2%
3237613 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.23e-01 82.7% 83.8%
3898664 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.32e-01 96.0% 51.7%