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JX100810.1__AFU88277.1__CcrColossus_gp407__00407

Bact-Vir

JX100810.1__AFU88277.1__CcrColossus_gp407__00407

Identity

Accession:
JX100810 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrColossus

TaxID: 1211640

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-82
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 73.0 5.95e-01 100.0% 52.8%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 74.0 5.84e-01 100.0% 56.2%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 5.39e-01 76.5% 66.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 71.0 5.42e-01 100.0% 58.1%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 4.64e-01 98.0% 45.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.29e-01 100.0% 44.2%
2hgcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 58.0 4.94e-01 98.0% 71.8%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.63 44.0 3.01e-01 74.5% 39.5%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.61 37.0 3.65e-01 78.4% 52.6%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.73e-01 90.2% 88.4%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 36.0 2.27e-01 70.6% 9.7%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.89e-01 94.1% 59.1%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.56 44.0 3.45e-01 98.0% 78.8%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.19e-01 78.4% 58.3%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 40.0 2.88e-01 86.3% 25.5%
3cvgC01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 40.0 3.41e-01 82.4% 48.8%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 43.0 2.68e-01 90.2% 41.2%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.53e-01 90.2% 84.8%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 2.97e-01 96.1% 49.5%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.53 39.0 3.10e-01 82.4% 74.3%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 40.0 3.01e-01 90.2% 48.3%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 38.0 3.00e-01 86.3% 57.3%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.56e-01 94.1% 69.9%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.06e-01 88.2% 42.4%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.31e-01 92.2% 53.1%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 41.0 3.10e-01 100.0% 90.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3797519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 60.0 3.35e-01 76.5% 7.4%
5003912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 74.0 5.14e-01 100.0% 51.9%
5039496 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.82 62.0 5.04e-01 80.4% 47.8%
3935690 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.81 68.0 5.03e-01 94.1% 62.3%
3491344 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 59.0 4.95e-01 78.4% 51.2%
3933222 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.80 67.0 4.71e-01 94.1% 49.7%
2635 101.1.2.41 ↗ alpha arrays › HTH › HTH › winged helix domain › FokI_dom_2 0.79 70.0 5.08e-01 100.0% 39.1%
4997255 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 5.18e-01 98.0% 58.0%
4936984 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 4.50e-01 86.3% 41.5%
4995231 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.75 62.0 5.10e-01 92.2% 72.2%
4966558 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 5.52e-01 98.0% 63.5%
3509042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 61.0 4.59e-01 94.1% 44.6%
3468223 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.74 62.0 3.70e-01 92.2% 28.1%
3481547 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.74 53.0 3.83e-01 78.4% 37.3%
3280969 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 61.0 4.87e-01 92.2% 47.0%
4508433 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.73 60.0 3.56e-01 90.2% 13.4%
3941757 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.73 63.0 4.71e-01 100.0% 50.0%
4970516 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.73 65.0 4.71e-01 100.0% 38.6%
None — 0.72 61.0 3.64e-01 94.1% 13.7%
3986225 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.72 62.0 4.17e-01 100.0% 30.2%
4947062 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 64.0 5.18e-01 100.0% 58.9%
3488429 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.70 58.0 3.91e-01 92.2% 73.0%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.69 57.0 3.87e-01 92.2% 68.6%
3485716 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.68 57.0 3.81e-01 92.2% 71.6%
3938245 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.67 56.0 3.66e-01 92.2% 63.6%
5075144 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.67 54.0 4.84e-01 100.0% 62.7%
3550392 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 58.0 3.97e-01 98.0% 87.6%
3625937 101.1.2.216 ↗ alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.67 55.0 4.11e-01 100.0% 42.0%
3608304 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.47e-01 100.0% 69.1%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 4.34e-01 98.0% 55.2%
4664382 101.1.2.293 ↗ alpha arrays › HTH › HTH › winged helix domain › IncFII_repA 0.66 55.0 3.68e-01 92.2% 49.2%
4971999 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 59.0 4.44e-01 100.0% 73.6%
3640260 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.66 54.0 3.60e-01 92.2% 66.8%
5077356 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 58.0 4.34e-01 100.0% 60.8%
3692895 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.65 53.0 3.47e-01 92.2% 70.9%
4954006 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 55.0 4.51e-01 96.1% 64.2%
3788427 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.64 47.0 3.90e-01 82.4% 80.0%
4951172 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.63 53.0 4.21e-01 94.1% 51.4%
4953109 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.62 54.0 4.44e-01 100.0% 66.3%
4117256 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.61 52.0 3.90e-01 96.1% 39.2%
3238923 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.61 52.0 2.99e-01 98.0% 40.7%
3224634 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.61 51.0 3.13e-01 100.0% 54.9%
3494392 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.60 46.0 2.79e-01 84.3% 50.5%
4927291 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 42.0 3.71e-01 88.2% 47.1%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.60 49.0 3.27e-01 100.0% 21.8%
3730463 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 3.76e-01 100.0% 46.9%
5027690 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 45.0 3.68e-01 96.1% 80.0%
3363253 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.56 40.0 2.47e-01 78.4% 62.9%
3218266 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 46.0 2.84e-01 100.0% 57.7%
None — 0.56 42.0 2.58e-01 88.2% 19.2%
5050502 243.18.1.0 ↗ a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain 0.55 39.0 2.92e-01 82.4% 27.3%
3928059 327.11.2.14 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_9 0.54 37.0 3.17e-01 84.3% 41.1%
3175120 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.54 43.0 3.49e-01 96.1% 44.5%
4942971 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.53 42.0 3.14e-01 98.0% 82.1%
3875701 274.1.1.38 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C 0.53 40.0 2.68e-01 86.3% 30.5%
4045503 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.50 37.0 3.33e-01 92.2% 54.7%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.50 42.0 3.10e-01 100.0% 48.0%