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JX100814.1__AFU86739.1__CcrRogue_gp257__00257

Bact-Vir

JX100814.1__AFU86739.1__CcrRogue_gp257__00257

Identity

Accession:
JX100814 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Poindextervirus› Caulobacter_phage_CcrRogue

TaxID: 2927986

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-69
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.66 46.0 4.72e-01 72.3% 77.0%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.65 47.0 3.46e-01 76.9% 60.4%
2gz4A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.65 46.0 3.24e-01 75.4% 84.0%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.63 47.0 3.59e-01 80.0% 39.5%
3nw0A03 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 42.0 4.38e-01 75.4% 77.6%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 41.0 4.25e-01 76.9% 77.4%
1eblA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 40.0 3.13e-01 80.0% 33.3%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 41.0 2.75e-01 81.5% 20.7%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 40.0 3.62e-01 78.5% 57.0%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 36.0 3.60e-01 73.8% 66.2%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.50e-01 76.9% 80.0%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 39.0 3.56e-01 83.1% 80.4%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.52 41.0 3.00e-01 87.7% 80.5%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 43.0 3.19e-01 95.4% 56.6%
4i1mB02 1.25.40.830 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 40.0 3.09e-01 87.7% 87.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3397452 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.66 37.0 3.85e-01 87.7% 60.0%
3936851 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.66 48.0 3.04e-01 76.9% 54.2%
3401287 603.2.1.12 ↗ alpha bundles › STAT-like › STAT › STAT › 7tm_7 0.65 50.0 3.01e-01 81.5% 34.6%
5080678 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.64 45.0 4.85e-01 76.9% 89.1%
3723305 3755.3.1.322 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LUC7 0.62 47.0 3.52e-01 81.5% 49.0%
165690 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.61 42.0 4.64e-01 72.3% 92.3%
3601077 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.60 41.0 4.01e-01 72.3% 64.3%
3295705 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 47.0 3.64e-01 83.1% 60.7%
4978597 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.59 53.0 3.82e-01 100.0% 71.4%
3416265 603.1.1.104 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.59 49.0 3.03e-01 92.3% 16.7%
3257678 5000.4.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.59 48.0 3.21e-01 92.3% 48.4%
4951670 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.14e-01 100.0% 73.8%
4001397 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.57 51.0 2.83e-01 96.9% 31.9%
4990094 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.56 40.0 3.88e-01 73.8% 82.9%
3308820 604.38.1.1 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle › CCDC84 0.56 43.0 3.77e-01 84.6% 100.0%
4344976 7516.1.1.26 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.56 42.0 2.59e-01 84.6% 56.5%
3737937 109.4.1.1672 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, CPL 0.55 46.0 2.77e-01 96.9% 38.8%
3307706 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.53 39.0 3.12e-01 80.0% 39.3%
3274487 605.1.1.155 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.53 48.0 3.47e-01 100.0% 70.9%
3846043 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.52 44.0 2.79e-01 95.4% 84.3%
5018928 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 46.0 3.64e-01 100.0% 73.3%
4245473 375.10.1.3 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf_DPOE_2 0.51 42.0 4.03e-01 92.3% 92.0%
3588209 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.51 35.0 2.68e-01 90.8% 32.9%
None — 0.50 37.0 3.45e-01 80.0% 67.1%
4969178 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.50 43.0 2.91e-01 98.5% 73.5%
5017955 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.50 45.0 3.54e-01 100.0% 54.8%