←Back to structures

JX100814.1__AFU86750.1__CcrRogue_gp268__00268

Bact-Vir

JX100814.1__AFU86750.1__CcrRogue_gp268__00268

Identity

Accession:
JX100814 ↗
Kingdom:
phage

Quality

56.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Poindextervirus› Caulobacter_phage_CcrRogue

TaxID: 2927986

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 124-193
PDB
Domain cluster: rep: ON529853.1__UTC29322.1__BAMBUS_02400__00239__D33-108
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 57.0 5.03e-01 100.0% 90.1%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 52.0 3.86e-01 85.7% 68.0%
3e0yA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 52.0 4.01e-01 85.7% 52.3%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.59e-01 100.0% 98.4%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 56.0 4.85e-01 100.0% 71.7%
2g7zA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.62 46.0 3.88e-01 80.0% 97.5%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.68e-01 100.0% 73.1%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 50.0 4.59e-01 100.0% 98.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 54.0 4.33e-01 100.0% 52.6%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 3.77e-01 90.0% 61.6%
2r6iA01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.58 38.0 3.41e-01 84.3% 47.9%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.58 49.0 4.25e-01 100.0% 64.4%
2knqA01 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.57 50.0 4.12e-01 100.0% 66.7%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.54e-01 82.9% 61.7%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 42.0 3.56e-01 82.9% 87.5%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 43.0 3.26e-01 85.7% 58.3%
2v3jA01 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.56 40.0 2.97e-01 75.7% 56.6%
6g20A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 48.0 3.53e-01 98.6% 67.2%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.11e-01 98.6% 76.6%
4r70B01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 46.0 3.40e-01 98.6% 65.0%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.54 41.0 3.63e-01 82.9% 84.8%
4bbyA02 3.30.160.650 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 33.0 3.81e-01 72.9% 97.7%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 39.0 3.39e-01 81.4% 82.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.32e-01 98.6% 63.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.53 41.0 3.40e-01 88.6% 91.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.48e-01 90.0% 69.7%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 38.0 3.28e-01 82.9% 87.3%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.34e-01 82.9% 85.7%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 30.0 2.55e-01 81.4% 32.8%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.14e-01 81.4% 67.4%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.32e-01 81.4% 72.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931659 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.33e-01 100.0% 71.8%
3660086 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 65.0 4.73e-01 100.0% 42.9%
3299261 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 65.0 5.33e-01 100.0% 63.3%
3652534 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 65.0 5.05e-01 100.0% 54.3%
3365155 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 65.0 5.32e-01 100.0% 66.7%
3444653 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 64.0 5.23e-01 100.0% 60.0%
3466906 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 64.0 4.83e-01 100.0% 46.9%
3372061 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 64.0 5.04e-01 100.0% 53.6%
4108761 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 64.0 4.92e-01 100.0% 50.0%
3322387 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 64.0 4.82e-01 100.0% 46.9%
3645945 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 64.0 3.73e-01 100.0% 14.2%
3429589 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 64.0 4.95e-01 100.0% 51.7%
3426019 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 63.0 4.93e-01 100.0% 51.7%
3682747 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 63.0 4.17e-01 100.0% 27.8%
3435809 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 63.0 5.38e-01 100.0% 74.5%
3313321 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 62.0 4.62e-01 97.1% 45.6%
3297411 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 61.0 5.61e-01 97.1% 81.1%
3684542 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 62.0 5.01e-01 100.0% 59.2%
3659873 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 63.0 5.41e-01 100.0% 71.4%
3447799 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 62.0 5.02e-01 100.0% 57.7%
3378640 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 62.0 4.61e-01 100.0% 47.1%
3680263 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 61.0 4.52e-01 100.0% 42.9%
3670440 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.67 60.0 5.49e-01 100.0% 76.7%
3548987 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.65 50.0 3.80e-01 82.9% 54.1%
3930044 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 5.49e-01 100.0% 95.0%
4562142 136.1.1.1 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.64 46.0 2.97e-01 77.1% 22.6%
3313232 207.1.1.258 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › WH_DRP 0.63 52.0 3.94e-01 88.6% 41.3%
3966741 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 52.0 3.45e-01 98.6% 28.5%
2554619 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.62 52.0 3.42e-01 100.0% 27.1%
3963338 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.61 51.0 3.28e-01 100.0% 25.4%
3402013 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.58 43.0 4.06e-01 80.0% 96.5%
5003809 223.1.1.63 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF2111 0.58 43.0 3.68e-01 81.4% 61.7%
3786167 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.57 46.0 4.25e-01 91.4% 92.6%
3857878 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.57 41.0 3.55e-01 80.0% 69.2%
1271913 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 43.0 3.30e-01 85.7% 61.5%
4294910 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.56 40.0 4.29e-01 98.6% 98.2%
3567791 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.56 44.0 4.02e-01 90.0% 89.0%
3981635 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 42.0 3.41e-01 85.7% 69.6%
4950368 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 40.0 3.16e-01 78.6% 68.4%
4256702 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.55 47.0 3.99e-01 100.0% 68.5%
3869545 220.1.1.125 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.54 45.0 3.68e-01 95.7% 93.6%
3684900 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.54 39.0 3.78e-01 80.0% 100.0%
3794522 2488.1.1.7 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.54 39.0 3.16e-01 78.6% 76.7%
3255777 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.54 38.0 3.47e-01 75.7% 89.5%
3936871 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.66e-01 91.4% 74.2%
3938764 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.53 44.0 4.03e-01 95.7% 92.6%
3512572 220.1.1.125 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.53 43.0 3.52e-01 95.7% 76.6%
3373462 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 39.0 3.14e-01 84.3% 44.4%
4045455 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 43.0 4.10e-01 100.0% 76.5%
4882166 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.52 37.0 3.60e-01 77.1% 93.8%
4001443 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.52 42.0 3.90e-01 91.4% 91.1%
3928048 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.51 41.0 2.58e-01 92.9% 53.2%
3599152 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.51 37.0 3.10e-01 81.4% 85.7%
3672647 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.51 34.0 2.15e-01 70.0% 78.6%
3191103 223.1.1.94 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS-like 0.51 37.0 3.27e-01 81.4% 80.0%
4679015 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.51 43.0 4.15e-01 100.0% 86.3%
4081896 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 37.0 3.24e-01 82.9% 60.8%
4959079 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 35.0 2.12e-01 75.7% 70.2%