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JX104231.1__AFN39075.1__BcepMigl_gp06__00006

Bact-Vir

JX104231.1__AFN39075.1__BcepMigl_gp06__00006

Identity

Accession:
JX104231 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lessievirus› Burkholderia_phage_BcepMigl

TaxID: 2886899

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-96
PDB
Domain cluster: rep: MN234178.1__QFG09599.1__PBI_TRIPLEJ_55__00055__D24-104
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 31.2 2.20e-07 65.8% 24.4%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.70 52.0 5.12e-01 81.0% 88.5%
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.69 54.0 5.44e-01 88.6% 84.6%
4nqwA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.68 55.0 5.44e-01 88.6% 95.2%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.64 44.0 4.43e-01 89.9% 70.9%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 49.0 4.86e-01 88.6% 82.4%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.61 41.0 4.51e-01 75.9% 90.0%
6ldiF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.41e-01 88.6% 69.8%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.60 48.0 4.80e-01 88.6% 87.5%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 44.0 4.35e-01 79.7% 77.1%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 39.0 4.01e-01 78.5% 69.2%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.57 44.0 3.14e-01 86.1% 83.8%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 41.0 3.93e-01 78.5% 81.1%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.56 45.0 4.07e-01 87.3% 87.3%
1dc1A02 1.10.238.90 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain 0.56 41.0 4.04e-01 79.7% 77.3%
5grqA00 1.10.8.810 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain 0.55 44.0 4.33e-01 92.4% 87.8%
2qvwB05 1.10.1740.150 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.51 34.0 3.53e-01 83.5% 72.4%
3kdzA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 42.0 3.23e-01 94.9% 38.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288536 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.74 56.0 5.44e-01 82.3% 73.3%
3278774 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.71 54.0 4.92e-01 81.0% 73.3%
3288147 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.69 53.0 4.92e-01 82.3% 66.0%
None — 0.69 52.0 4.77e-01 81.0% 73.3%
4185350 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.69 52.0 5.22e-01 82.3% 81.2%
4175747 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.68 55.0 5.29e-01 88.6% 77.8%
4017306 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.67 51.0 5.10e-01 81.0% 85.0%
3588943 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.67 58.0 5.09e-01 97.5% 100.0%
4128045 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.67 51.0 4.83e-01 82.3% 73.7%
4013145 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 56.0 5.77e-01 98.7% 98.7%
3960065 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.66 52.0 4.81e-01 88.6% 65.7%
3962480 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.66 52.0 5.09e-01 88.6% 80.0%
3387635 148.1.3.26 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.64 54.0 5.15e-01 96.2% 88.4%
4504086 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.64 45.0 4.88e-01 89.9% 92.3%
3190824 166.1.1.0 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.62 50.0 5.16e-01 88.6% 93.3%
3814488 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.62 51.0 4.58e-01 91.1% 90.9%
3884008 5054.1.1.80 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PF29331 0.60 44.0 3.63e-01 79.7% 95.5%
3713301 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.57 42.0 4.04e-01 81.0% 70.5%
4994651 2007.2.3.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.57 48.0 3.48e-01 96.2% 66.0%
4876272 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.56 44.0 4.22e-01 89.9% 74.2%
3664504 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.56 47.0 3.85e-01 96.2% 92.4%
2133274 611.10.1.1 ↗ alpha bundles › N-cbl like › DAXX helical bundle domain › DAXX helical bundle domain › Daxx 0.56 44.0 4.38e-01 91.1% 91.9%
4241645 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.53 39.0 3.77e-01 77.2% 80.0%
3470998 3718.1.1.2 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › NAD4L 0.51 36.0 3.73e-01 91.1% 78.7%
3243586 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.51 36.0 3.61e-01 73.4% 88.7%
D2 high residues 121-251
PDB
Domain cluster: rep: IMGVR_UViG_3300028603_004297-3300028603-Ga0265293_100394579__D186-354
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 90.0 2.20e-25 100.0% 63.4%