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JX104231.1__AFN39113.1__BcepMigl_gp44__00044

Bact-Vir

JX104231.1__AFN39113.1__BcepMigl_gp44__00044

Identity

Accession:
JX104231 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lessievirus› Burkholderia_phage_BcepMigl

TaxID: 2886899

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-91
PDB
Domain cluster: rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01541.31 best GIY-YIG 33.9 4.30e-08 97.7% 85.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.91 87.0 8.62e-01 100.0% 97.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 40.0 4.07e-01 83.0% 54.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.70 40.0 4.58e-01 75.0% 75.8%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 38.0 3.73e-01 83.0% 50.0%
3kopA00 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.66 45.0 3.72e-01 70.5% 100.0%
1bw3A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.61 42.0 3.74e-01 85.2% 49.6%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.61 41.0 3.30e-01 70.5% 77.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 36.0 3.62e-01 71.6% 57.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 36.0 2.94e-01 71.6% 31.7%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.58 40.0 4.12e-01 72.7% 75.9%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 35.0 3.47e-01 71.6% 57.4%
1j6uA03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.53 41.0 3.63e-01 84.1% 90.9%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.03e-01 87.5% 48.1%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 39.0 3.55e-01 86.4% 98.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
77927 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.92 88.0 8.61e-01 100.0% 94.7%
4677975 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.85 80.0 7.14e-01 100.0% 77.1%
3496147 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.84 78.0 7.47e-01 98.9% 99.0%
3582540 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.83 77.0 7.27e-01 100.0% 98.1%
5070656 821.1.1.15 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.77 57.0 5.78e-01 98.9% 80.0%
3467170 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.72 48.0 5.43e-01 79.5% 95.2%
3389034 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.70 42.0 4.98e-01 97.7% 94.5%
4161260 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.70 34.0 4.54e-01 77.3% 91.1%
4507405 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.69 34.0 4.52e-01 77.3% 91.1%
3969578 3268.1.1.0 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.68 32.0 3.95e-01 71.6% 70.9%
2968539 3868.1.1.1 ↗ a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 0.63 56.0 4.35e-01 96.6% 58.6%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.60 41.0 4.52e-01 71.6% 100.0%
4929321 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 37.0 4.26e-01 96.6% 93.3%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 34.0 4.12e-01 71.6% 100.0%
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.58 39.0 4.38e-01 70.5% 100.0%
3720467 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 43.0 3.65e-01 88.6% 76.2%
4078985 231.1.1.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 0.55 42.0 2.55e-01 84.1% 43.6%
3283954 231.1.1.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 0.54 39.0 2.37e-01 76.1% 44.9%
5059763 206.1.3.5 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden 0.54 37.0 2.73e-01 71.6% 77.1%
5064301 12.3.1.18 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N 0.53 38.0 2.68e-01 94.3% 22.3%
D2 high residues 134-194
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.89 61.0 7.07e-01 85.2% 97.8%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.77 64.0 5.04e-01 91.8% 44.4%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 5.04e-01 73.8% 65.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.75 53.0 4.38e-01 73.8% 47.6%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.73 53.0 4.51e-01 78.7% 46.5%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 59.0 6.16e-01 86.9% 98.2%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.72 54.0 5.22e-01 85.2% 72.1%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.22e-01 73.8% 53.1%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 3.54e-01 72.1% 41.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 48.0 4.76e-01 77.0% 72.3%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 5.04e-01 80.3% 96.5%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.20e-01 73.8% 71.2%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.40e-01 75.4% 82.3%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 50.0 3.73e-01 88.5% 100.0%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 44.0 4.11e-01 77.0% 65.8%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 40.0 3.94e-01 77.0% 61.4%
2oceA01 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.57 46.0 3.76e-01 88.5% 80.5%
5i1uA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 43.0 2.90e-01 93.4% 66.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.66e-01 77.0% 100.0%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 36.0 3.56e-01 70.5% 76.1%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 40.0 3.21e-01 86.9% 58.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3544647 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.88 60.0 5.91e-01 75.4% 66.2%
5028266 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 59.0 6.00e-01 73.8% 71.2%
3283589 101.1.1.368 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.87 60.0 6.61e-01 72.1% 92.0%
4385054 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 52.0 6.25e-01 70.5% 100.0%
3927372 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 54.0 4.91e-01 73.8% 53.8%
4863786 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.79 55.0 5.77e-01 73.8% 80.0%
4054648 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 62.0 6.49e-01 90.2% 94.5%
3391053 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 51.0 5.70e-01 70.5% 93.3%
5063318 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.76 57.0 6.01e-01 80.3% 89.1%
3933366 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.74 62.0 5.96e-01 91.8% 84.3%
3603739 101.1.1.498 ↗ alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 0.73 65.0 4.07e-01 100.0% 39.4%
4588822 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.72 51.0 5.06e-01 77.0% 75.4%
1159643 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.72 64.0 6.14e-01 100.0% 93.0%
4964802 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 48.0 4.90e-01 72.1% 73.3%
4659976 101.1.1.25 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.70 61.0 4.66e-01 100.0% 83.2%
4994602 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 43.0 4.42e-01 73.8% 68.3%
4008959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.42e-01 96.7% 100.0%
5043001 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 54.0 4.41e-01 86.9% 62.9%
5031888 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 46.0 4.23e-01 73.8% 56.2%
3410877 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.27e-01 100.0% 81.4%
3287232 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.08e-01 100.0% 80.0%