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JX123262.1__AFN39333.1__CC2_077__00077

Bact-Vir

JX123262.1__AFN39333.1__CC2_077__00077

Identity

Accession:
JX123262 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_CC2

TaxID: 1204516

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-80
PDB
Domain cluster: rep: NC_052660.1__YP_009986652.1__JR325_gp173__00276__D78-150
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.66 45.0 2.98e-01 71.4% 95.6%
5u81A01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.63 43.0 2.82e-01 71.4% 90.7%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 47.0 3.72e-01 100.0% 38.1%
1mu5A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 46.0 3.11e-01 96.4% 22.4%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.37e-01 94.6% 80.5%
8adnN01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 42.0 2.99e-01 82.1% 93.7%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.56 43.0 4.23e-01 94.6% 75.4%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.47e-01 94.6% 85.3%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.30e-01 94.6% 78.7%
1dtdB00 3.30.1040.10 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › Carboxypeptidase inhibitor 0.56 40.0 3.94e-01 78.6% 100.0%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.23e-01 94.6% 79.5%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 45.0 3.46e-01 96.4% 51.7%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.21e-01 94.6% 82.3%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.32e-01 94.6% 79.5%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.59e-01 94.6% 98.3%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.36e-01 94.6% 78.9%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 45.0 3.14e-01 100.0% 26.6%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 45.0 3.10e-01 94.6% 87.6%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 46.0 3.10e-01 98.2% 24.4%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 38.0 2.62e-01 75.0% 88.8%
3r5xD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 43.0 3.13e-01 87.5% 65.2%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.20e-01 94.6% 71.6%
6qm7K00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 38.0 2.71e-01 76.8% 94.7%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 45.0 3.06e-01 98.2% 86.3%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.72e-01 94.6% 57.1%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.20e-01 94.6% 74.6%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 41.0 3.35e-01 100.0% 42.0%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.18e-01 94.6% 81.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.39e-01 98.2% 87.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.29e-01 94.6% 90.9%
6muwN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 42.0 2.94e-01 94.6% 94.2%
1yarH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 36.0 2.61e-01 75.0% 88.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 44.0 3.52e-01 100.0% 46.7%
1a48A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 2.97e-01 76.8% 85.6%
1xp4C02 2.60.410.10 Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain 0.51 36.0 3.19e-01 78.6% 94.4%
3aapA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 41.0 3.25e-01 94.6% 89.6%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 38.0 2.83e-01 94.6% 98.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3520221 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.64 44.0 3.65e-01 100.0% 39.0%
2991088 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 49.0 3.01e-01 94.6% 97.6%
5033234 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.57 48.0 3.61e-01 98.2% 37.2%
3218497 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.57 48.0 2.92e-01 96.4% 14.9%
4963501 11.1.1.1049 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7827 0.56 46.0 3.74e-01 96.4% 66.1%
4276290 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.56 46.0 3.07e-01 96.4% 30.8%
4957146 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.55 45.0 3.06e-01 98.2% 23.6%
3902168 5.1.4.281 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA, Tectonin 0.54 46.0 2.91e-01 96.4% 98.4%
5043777 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.53 45.0 3.02e-01 98.2% 24.0%
4233359 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 45.0 3.40e-01 96.4% 56.4%
3946653 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 42.0 3.26e-01 98.2% 59.3%
3632850 5.1.4.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.50 43.0 2.63e-01 96.4% 25.2%