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JX145341.1__AFO72077.1__phiMMP02_gp16__00016

Bact-Vir

JX145341.1__AFO72077.1__phiMMP02_gp16__00016

Identity

Accession:
JX145341 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Colneyvirus› Clostridium_phage_phiMMP02

TaxID: 1204534

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-49
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ljyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.94 63.0 4.03e-01 76.6% 17.3%
2odaA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.74 63.0 4.13e-01 95.7% 82.3%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.73 42.0 4.37e-01 70.2% 60.0%
5vntA00 1.10.950.10 Mainly Alpha › Orthogonal Bundle › Villin Headpiece Domain; Chain A › Villin headpiece domain 0.73 53.0 4.86e-01 78.7% 60.3%
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.71 55.0 5.08e-01 85.1% 68.9%
1qzpA00 1.10.950.10 Mainly Alpha › Orthogonal Bundle › Villin Headpiece Domain; Chain A › Villin headpiece domain 0.70 50.0 4.52e-01 78.7% 83.8%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 52.0 3.65e-01 85.1% 27.2%
7e4mA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.69 60.0 3.76e-01 100.0% 21.8%
5jrtA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.69 46.0 4.16e-01 70.2% 60.9%
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.65 53.0 4.41e-01 91.5% 80.7%
4jzaA02 1.10.520.60 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.62 48.0 3.63e-01 100.0% 34.5%
2q0zX02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 40.0 3.86e-01 70.2% 58.6%
3hinA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.60 49.0 4.67e-01 91.5% 76.4%
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.50 42.0 4.33e-01 93.6% 97.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027189 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.87 72.0 5.67e-01 100.0% 46.7%
3570397 3469.1.1.0 ↗ extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) 0.83 64.0 6.31e-01 83.0% 78.0%
3177418 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.79 57.0 3.84e-01 76.6% 23.0%
5052392 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.77 68.0 5.06e-01 97.9% 60.9%
4518945 2006.1.3.22 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DabA 0.77 64.0 3.63e-01 95.7% 67.8%
4975727 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.77 61.0 4.73e-01 89.4% 41.0%
3818733 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.76 57.0 3.99e-01 80.9% 29.0%
3848311 155.1.1.1 ↗ alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP 0.76 55.0 4.64e-01 76.6% 49.3%
4002673 155.1.1.1 ↗ alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP 0.75 55.0 4.79e-01 78.7% 54.3%
3265417 155.1.1.1 ↗ alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP 0.74 55.0 5.10e-01 78.7% 69.5%
3702384 5046.1.1.0 ↗ extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b 0.74 63.0 3.97e-01 97.9% 18.9%
3347020 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.74 61.0 5.91e-01 100.0% 87.3%
1069770 155.1.1.1 ↗ alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP 0.74 51.0 5.88e-01 72.3% 100.0%
3546236 377.1.1.97 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › VHP 0.73 55.0 4.80e-01 78.7% 55.9%
3398636 155.1.1.1 ↗ alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP 0.73 54.0 4.91e-01 78.7% 60.3%
3255444 155.1.1.1 ↗ alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP 0.73 54.0 4.86e-01 78.7% 59.4%
3353101 155.1.1.1 ↗ alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP 0.73 54.0 4.87e-01 78.7% 58.5%
2834433 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.72 63.0 3.59e-01 100.0% 16.9%
3426400 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 51.0 4.92e-01 87.2% 74.5%
3223965 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.66 44.0 4.27e-01 72.3% 60.0%
3366093 6013.1.1.0 ↗ alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.66 50.0 4.72e-01 87.2% 68.3%
4085728 102.1.1.100 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.65 47.0 4.18e-01 78.7% 55.7%
3301615 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.65 49.0 4.50e-01 87.2% 63.1%
3688549 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.64 43.0 4.00e-01 70.2% 56.7%
4024494 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.63 44.0 4.24e-01 74.5% 67.3%
3658020 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.63 50.0 3.61e-01 89.4% 45.9%
3655803 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.63 50.0 3.33e-01 91.5% 46.5%
3551711 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 41.0 4.03e-01 72.3% 61.8%
3488780 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.60 42.0 4.05e-01 78.7% 63.6%
3724024 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 50.0 4.14e-01 100.0% 61.7%
3865559 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.59 39.0 3.74e-01 70.2% 56.7%
3381716 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.59 41.0 3.98e-01 76.6% 67.3%
3551495 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 39.0 3.68e-01 70.2% 56.7%