←Back to structures

JX181825.1__AFU64048.1__X__00165

Bact-Vir

JX181825.1__AFU64048.1__X__00165

Identity

Accession:
JX181825 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gelderlandvirus› Salmonella_phage_STML-198

TaxID: 1204531

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-83
PDB
Domain cluster: rep: OQ331036.1__WCZ66178.1__X__00014__D6-91
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.65 48.0 3.72e-01 81.3% 83.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 49.0 4.37e-01 86.7% 68.5%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.62 53.0 5.10e-01 98.7% 96.6%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 56.0 4.78e-01 100.0% 79.5%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.61 44.0 4.34e-01 77.3% 80.5%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 55.0 4.96e-01 100.0% 86.0%
4nxyA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 52.0 4.05e-01 100.0% 75.0%
7kbrC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 35.0 2.93e-01 92.0% 31.3%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 54.0 4.74e-01 100.0% 78.2%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 50.0 4.13e-01 94.7% 97.9%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.91e-01 100.0% 87.0%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 44.0 3.19e-01 81.3% 28.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 51.0 4.44e-01 100.0% 86.3%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.58 50.0 4.00e-01 100.0% 81.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 49.0 3.74e-01 100.0% 85.6%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.23e-01 100.0% 71.3%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 51.0 4.38e-01 100.0% 92.3%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.57 47.0 4.65e-01 92.0% 94.9%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 47.0 4.54e-01 92.0% 100.0%
1sr8A02 3.30.2110.10 Alpha Beta › 2-Layer Sandwich › CbiD-like › CbiD-like 0.56 48.0 3.93e-01 100.0% 58.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.25e-01 100.0% 75.0%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.07e-01 100.0% 83.6%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.55 48.0 4.55e-01 100.0% 95.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.55 39.0 3.85e-01 81.3% 71.2%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 49.0 4.17e-01 100.0% 77.3%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.11e-01 100.0% 72.7%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 40.0 3.53e-01 92.0% 54.7%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.13e-01 100.0% 97.1%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.91e-01 74.7% 91.5%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.20e-01 76.0% 69.9%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 45.0 3.89e-01 100.0% 92.8%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 36.0 2.98e-01 74.7% 88.5%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.68e-01 100.0% 78.2%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 38.0 3.28e-01 97.3% 52.2%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.50 42.0 3.64e-01 100.0% 59.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 33.0 3.76e-01 96.0% 98.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.70 52.0 4.58e-01 78.7% 84.5%
3605436 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 50.0 4.09e-01 85.3% 64.8%
None — 0.64 57.0 4.70e-01 100.0% 83.7%
3341174 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 55.0 4.49e-01 100.0% 80.7%
None — 0.62 55.0 4.47e-01 100.0% 76.6%
5080860 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.62 54.0 3.99e-01 100.0% 42.0%
3494650 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 55.0 4.47e-01 100.0% 62.1%
3500713 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.60 54.0 4.53e-01 100.0% 74.4%
2658868 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.60 47.0 3.92e-01 85.3% 84.3%
3470251 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 54.0 4.74e-01 100.0% 78.2%
3524527 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.60 54.0 4.72e-01 100.0% 78.2%
3500814 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 54.0 4.59e-01 100.0% 71.7%
3390005 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.59 53.0 4.38e-01 100.0% 78.5%
3595790 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.00e-01 100.0% 76.0%
3578128 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 40.0 4.46e-01 77.3% 100.0%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.58 40.0 4.29e-01 98.7% 84.4%
3614205 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.16e-01 100.0% 75.0%
3719117 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.57 51.0 3.05e-01 100.0% 18.5%
3990887 375.1.1.89 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.57 39.0 4.31e-01 76.0% 96.4%
4025949 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.57 51.0 4.31e-01 100.0% 80.8%
5048969 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.57 43.0 4.32e-01 81.3% 93.3%
3715477 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.57 51.0 4.18e-01 100.0% 67.4%
3522266 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 51.0 4.35e-01 100.0% 79.2%
4930271 212.1.1.14 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.56 48.0 3.88e-01 100.0% 63.7%
4023915 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.56 49.0 4.31e-01 100.0% 84.3%
3922015 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 49.0 4.10e-01 100.0% 74.1%
3481724 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.36e-01 100.0% 89.1%
3935202 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.56 49.0 4.23e-01 100.0% 75.0%
3596066 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.20e-01 100.0% 79.2%
3919968 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 49.0 4.18e-01 100.0% 80.0%
3670573 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 49.0 3.72e-01 100.0% 50.3%
3700460 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 50.0 4.19e-01 100.0% 74.4%
3858885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 37.0 4.09e-01 96.0% 94.5%
3717734 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.10e-01 100.0% 84.0%
5067503 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.55 48.0 4.10e-01 100.0% 84.0%
3932851 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.55 48.0 4.16e-01 100.0% 82.5%
3601837 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 50.0 3.02e-01 100.0% 18.3%
3721245 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 46.0 3.60e-01 98.7% 60.0%
3171382 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.54 47.0 4.44e-01 96.0% 85.6%
3177145 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 43.0 4.00e-01 89.3% 87.0%
3802317 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 39.0 3.45e-01 77.3% 87.8%
3626094 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.54 47.0 3.79e-01 100.0% 80.0%
144577 331.3.1.22 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START_2 0.54 36.0 3.11e-01 70.7% 46.9%
3490216 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.54 46.0 3.98e-01 100.0% 82.4%
3722133 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.54 37.0 3.17e-01 72.0% 72.8%
3699020 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 47.0 3.16e-01 100.0% 82.3%
3291210 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.53 44.0 3.72e-01 98.7% 75.2%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 42.0 2.78e-01 89.3% 33.7%
4029057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 4.23e-01 100.0% 92.4%
3165222 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 42.0 4.12e-01 90.7% 83.5%
3592358 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.04e-01 100.0% 87.0%
3629315 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 46.0 3.48e-01 100.0% 64.3%
5039391 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.83e-01 100.0% 82.5%
3878278 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 46.0 3.68e-01 100.0% 75.3%
3721418 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.52 41.0 2.60e-01 89.3% 28.6%
None — 0.51 43.0 2.64e-01 100.0% 14.9%
3876697 5.1.5.110 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_FAM234A_B 0.51 42.0 2.68e-01 100.0% 36.7%
5012844 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 36.0 3.78e-01 78.7% 94.3%