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JX195166.1__AFQ22176.1__My1_017__00017

Bact-Vir

JX195166.1__AFQ22176.1__My1_017__00017

Identity

Accession:
JX195166 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Myunavirus› Pectobacterium_phage_My1

TaxID: 1204539

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 60-117
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.62 44.0 2.65e-01 75.9% 95.8%
5a15A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.60 48.0 4.10e-01 87.9% 87.4%
4hwiB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 46.0 4.36e-01 84.5% 100.0%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 45.0 4.14e-01 84.5% 100.0%
3mdmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 42.0 2.53e-01 75.9% 96.1%
3e59B02 3.30.60.140 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 38.0 4.18e-01 70.7% 100.0%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 52.0 4.14e-01 100.0% 61.0%
1a68A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 43.0 3.88e-01 82.8% 96.6%
4crhA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 43.0 3.77e-01 82.8% 76.6%
2gu0A02 3.30.428.20 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain 0.58 41.0 3.09e-01 77.6% 35.8%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.90e-01 96.6% 90.9%
2qytA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 48.0 3.47e-01 100.0% 93.0%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 40.0 3.40e-01 77.6% 85.6%
1ip9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 39.0 3.55e-01 79.3% 88.2%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 43.0 3.93e-01 91.4% 94.0%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 43.0 3.52e-01 91.4% 95.7%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.82e-01 91.4% 91.6%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 41.0 3.52e-01 91.4% 95.3%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.52 38.0 3.88e-01 93.1% 82.8%
3ga1A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.52 38.0 3.09e-01 77.6% 67.3%
2ppiA01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.52 36.0 3.10e-01 77.6% 74.1%
3pm0A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 44.0 2.67e-01 100.0% 71.9%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.41e-01 94.8% 85.0%
6j95A01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 42.0 2.54e-01 94.8% 75.9%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.39e-01 96.6% 90.2%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.41e-01 100.0% 84.1%
2ihcD01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 34.0 2.85e-01 70.7% 44.9%
3m5bA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 37.0 3.01e-01 77.6% 64.2%
3hqiA02 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.50 36.0 2.79e-01 77.6% 52.1%
1eupA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 42.0 2.60e-01 100.0% 94.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.70 49.0 3.47e-01 87.9% 23.9%
4977157 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 36.0 3.97e-01 79.3% 66.7%
3980132 823.1.1.1 ↗ a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.64 48.0 4.94e-01 93.1% 85.5%
3896819 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.64 47.0 2.86e-01 81.0% 21.7%
3489284 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.64 48.0 3.87e-01 82.8% 74.2%
3740414 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.64 49.0 4.12e-01 84.5% 98.0%
3856731 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.62 46.0 3.53e-01 79.3% 73.3%
3505277 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.62 46.0 4.22e-01 79.3% 100.0%
3500672 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.61 48.0 3.87e-01 87.9% 86.7%
3928230 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.61 45.0 3.70e-01 81.0% 83.6%
3937585 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.61 47.0 3.80e-01 87.9% 76.7%
3236305 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.60 45.0 3.49e-01 82.8% 70.0%
3776870 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 45.0 2.72e-01 84.5% 21.1%
3853593 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.60 45.0 3.70e-01 82.8% 71.8%
3593647 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.59 47.0 3.89e-01 87.9% 85.7%
3798473 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.59 44.0 3.59e-01 82.8% 80.9%
3556970 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.59 49.0 3.81e-01 98.3% 69.7%
3880924 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.59 43.0 3.17e-01 81.0% 54.7%
3762687 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.58 44.0 2.64e-01 84.5% 20.0%
3959734 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 36.0 3.14e-01 72.4% 37.9%
3559014 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 45.0 3.65e-01 87.9% 80.9%
3529989 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 43.0 3.64e-01 79.3% 84.2%
1146735 243.1.1.29 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4783 0.57 46.0 3.90e-01 96.6% 90.9%
3963568 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 41.0 2.72e-01 79.3% 19.3%
3543692 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.57 41.0 3.06e-01 77.6% 52.7%
3266769 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 44.0 3.45e-01 86.2% 65.4%
4023973 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 41.0 3.46e-01 79.3% 77.1%
3579114 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.57 43.0 3.46e-01 86.2% 74.4%
3487160 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.57 43.0 3.73e-01 87.9% 85.0%
3710752 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.56 46.0 3.59e-01 89.7% 71.2%
3536828 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.56 42.0 3.35e-01 84.5% 73.1%
5062758 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.07e-01 84.5% 81.7%
4802636 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.56 41.0 3.26e-01 79.3% 72.0%
3935294 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.55 41.0 3.09e-01 79.3% 55.7%
3593577 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.55 41.0 3.33e-01 81.0% 86.4%
4016361 2003.1.1.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ApbA 0.54 47.0 3.26e-01 100.0% 92.6%
3722289 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 40.0 3.23e-01 82.8% 81.1%
3630774 2003.1.1.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ApbA 0.54 47.0 3.14e-01 100.0% 95.0%
3871596 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 39.0 3.02e-01 77.6% 57.1%
4935223 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 42.0 3.28e-01 96.6% 37.8%
4014258 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 46.0 3.16e-01 100.0% 88.9%
3608066 4961.1.1.0 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit 0.54 38.0 3.10e-01 75.9% 64.2%
3998473 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 41.0 2.94e-01 82.8% 51.4%
5062024 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 45.0 3.29e-01 100.0% 93.0%
3546389 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 39.0 3.05e-01 77.6% 63.2%
3584092 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 40.0 3.40e-01 84.5% 81.9%
3217574 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 39.0 3.26e-01 79.3% 73.3%
2627906 2003.1.1.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ApbA 0.53 45.0 3.31e-01 100.0% 91.4%
3501228 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 38.0 2.94e-01 77.6% 56.4%
3407351 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 40.0 3.32e-01 82.8% 74.3%
3172888 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 42.0 3.45e-01 87.9% 71.8%
3638065 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.52 41.0 3.26e-01 91.4% 86.7%
3862238 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.52 38.0 2.51e-01 77.6% 31.2%
4971350 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.52 40.0 2.55e-01 89.7% 21.0%
3270436 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.52 43.0 3.62e-01 100.0% 83.5%
3483346 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.52 40.0 3.17e-01 82.8% 74.4%
3491026 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.51 38.0 3.01e-01 79.3% 62.5%
3619982 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.50 37.0 2.77e-01 79.3% 52.4%
3935938 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.50 37.0 3.01e-01 79.3% 68.7%