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JX195166.1__AFQ22207.1__My1_048__00048

Bact-Vir

JX195166.1__AFQ22207.1__My1_048__00048

Identity

Accession:
JX195166 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Myunavirus› Pectobacterium_phage_My1

TaxID: 1204539

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-73
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.82 58.0 5.30e-01 81.4% 57.8%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 40.0 3.35e-01 74.3% 96.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 46.0 3.32e-01 94.3% 73.8%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 42.0 3.16e-01 90.0% 86.5%
1zx8A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.52 37.0 3.19e-01 78.6% 99.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.86 72.0 6.08e-01 100.0% 56.4%
3385437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.86 69.0 6.07e-01 100.0% 60.0%
2392036 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.84 72.0 6.06e-01 100.0% 57.5%
4254576 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.82 71.0 6.19e-01 98.6% 64.0%
3988098 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.81 75.0 6.19e-01 100.0% 60.8%
4032331 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.81 75.0 6.25e-01 100.0% 61.7%
3970095 3430.1.1.0 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain 0.80 71.0 5.94e-01 100.0% 58.3%
4083034 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.80 74.0 6.25e-01 100.0% 63.6%
4486406 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.80 68.0 5.76e-01 100.0% 58.2%
4211416 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.79 73.0 6.19e-01 100.0% 63.6%
3499701 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.65 54.0 5.23e-01 95.7% 98.8%
3604685 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 4.43e-01 72.9% 85.0%
3208700 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 47.0 3.56e-01 91.4% 71.0%
4568169 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 36.0 3.36e-01 77.1% 53.3%
4930147 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.54 42.0 3.39e-01 97.1% 43.7%
3623159 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 40.0 3.49e-01 82.9% 66.1%
4443054 3115.1.1.9 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.53 39.0 3.43e-01 82.9% 60.0%
4382198 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.53 42.0 3.36e-01 98.6% 43.7%
3508713 382.1.1.25 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.53 39.0 3.41e-01 82.9% 60.0%
3744811 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.52 43.0 3.36e-01 91.4% 67.1%
3598532 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.52 42.0 3.13e-01 94.3% 84.9%
4666109 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.51 41.0 3.19e-01 97.1% 40.7%
3618238 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 37.0 3.35e-01 81.4% 65.4%
4001470 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 34.0 3.05e-01 80.0% 47.1%