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JX195166.1__AFQ22232.1__My1_073__00073

Bact-Vir

JX195166.1__AFQ22232.1__My1_073__00073

Identity

Accession:
JX195166 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 5.21e-01 97.9% 50.0%
1ecaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.77 61.0 4.37e-01 87.5% 44.1%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.74 65.0 5.77e-01 100.0% 71.4%
3eetA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.50e-01 97.9% 84.6%
3ttvA02 1.20.1370.20 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain 0.71 56.0 4.42e-01 89.6% 41.3%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.71 54.0 4.73e-01 83.3% 74.0%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 4.94e-01 95.8% 64.7%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.69 51.0 3.84e-01 93.8% 31.7%
4zm6A01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.68 51.0 3.05e-01 97.9% 11.0%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 49.0 3.02e-01 79.2% 17.6%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.66 54.0 4.22e-01 93.8% 80.9%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.73e-01 97.9% 68.4%
2rhqB03 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.66 47.0 3.11e-01 77.1% 77.2%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.65 54.0 4.57e-01 95.8% 62.7%
2etjA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 52.0 3.49e-01 93.8% 69.5%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.64 53.0 4.59e-01 95.8% 86.1%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.30e-01 100.0% 68.4%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 51.0 5.16e-01 100.0% 100.0%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 50.0 3.85e-01 91.7% 37.2%
2j5oA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.79e-01 100.0% 96.9%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.77e-01 97.9% 100.0%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 51.0 4.73e-01 100.0% 73.1%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 45.0 4.09e-01 79.2% 55.9%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.70e-01 100.0% 98.4%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.85e-01 91.7% 89.8%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.62 44.0 3.95e-01 77.1% 54.5%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 49.0 4.96e-01 100.0% 95.8%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 50.0 4.48e-01 97.9% 64.8%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.61 51.0 4.61e-01 100.0% 85.9%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.61 41.0 3.55e-01 70.8% 43.6%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.61 51.0 4.01e-01 95.8% 57.9%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 48.0 4.06e-01 93.8% 82.8%
5zr6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.36e-01 93.8% 96.6%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 48.0 2.89e-01 95.8% 24.9%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 43.0 3.93e-01 85.4% 97.3%
2xf5B00 1.10.10.1530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 46.0 4.64e-01 95.8% 92.0%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 45.0 3.42e-01 85.4% 34.8%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 47.0 4.67e-01 95.8% 92.3%
2zfuA01 1.10.10.2150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal RNA-processing protein 8, N-terminal domain 0.58 46.0 4.60e-01 100.0% 86.3%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.85e-01 91.7% 53.4%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.30e-01 77.1% 37.5%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.57 50.0 3.32e-01 100.0% 26.7%
2kvsA00 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.56 48.0 4.15e-01 100.0% 63.7%
2x64A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 44.0 3.49e-01 97.9% 69.0%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.54 42.0 3.11e-01 91.7% 79.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042947 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.84 71.0 7.10e-01 97.9% 94.0%
4938071 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 66.0 6.81e-01 91.7% 100.0%
3890108 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.80 70.0 5.40e-01 100.0% 78.2%
4392311 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.80 64.0 6.63e-01 89.6% 97.8%
3248046 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.78 69.0 5.23e-01 100.0% 73.9%
4470343 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.78 69.0 5.13e-01 100.0% 70.8%
3777242 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.78 69.0 5.11e-01 100.0% 70.8%
3397049 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.78 67.0 5.21e-01 100.0% 77.1%
3240039 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.77 69.0 5.93e-01 100.0% 80.0%
3179036 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.75 63.0 5.61e-01 95.8% 65.7%
3847014 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.75 64.0 4.90e-01 100.0% 74.8%
3550609 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.75 65.0 4.93e-01 100.0% 78.3%
3962967 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 63.0 4.01e-01 97.9% 29.8%
5029219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 58.0 5.65e-01 93.8% 80.0%
5022022 2003.1.1.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.73 63.0 3.84e-01 97.9% 63.0%
3733705 4048.1.1.1 alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel 0.71 56.0 4.56e-01 89.6% 45.3%
3528983 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 42.0 4.60e-01 70.8% 72.5%
3993676 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.69 58.0 4.63e-01 100.0% 77.1%
4979742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.00e-01 100.0% 60.0%
3073109 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 47.0 4.10e-01 83.3% 47.3%
4937675 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 50.0 5.17e-01 93.8% 100.0%
4543174 4156.1.1.4 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.68 52.0 3.57e-01 85.4% 67.6%
3940352 137.1.1.0 alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors 0.67 55.0 5.13e-01 100.0% 75.4%
3403179 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.67 47.0 3.66e-01 77.1% 34.3%
4983993 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 53.0 5.09e-01 100.0% 90.0%
3628186 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.67 56.0 4.19e-01 100.0% 62.3%
3660125 3711.1.1.4 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.66 47.0 3.92e-01 81.2% 42.4%
314012 4254.1.1.1 alpha arrays › YoaC-like › YoaC-like › YoaC-like › DUF1889 0.66 55.0 4.40e-01 100.0% 50.9%
4033902 4146.1.1.1 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.66 58.0 5.39e-01 100.0% 100.0%
5031872 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.97e-01 97.9% 83.3%
3215991 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 5.01e-01 100.0% 80.0%
4343332 3166.1.1.1 alpha arrays › 60S ribosomal protein rpL36 (L36e) › 60S ribosomal protein rpL36 (L36e) › 60S ribosomal protein rpL36 (L36e) › Ribosomal_L36e 0.65 53.0 4.42e-01 97.9% 59.6%
4224489 4156.1.1.4 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.64 51.0 3.04e-01 97.9% 96.5%
3926197 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 53.0 4.21e-01 100.0% 43.6%
4238998 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.64 45.0 4.03e-01 79.2% 51.4%
4929680 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 54.0 5.10e-01 100.0% 86.7%
4948128 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.73e-01 97.9% 76.9%
3932555 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.63 52.0 4.60e-01 97.9% 62.7%
3767171 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.63 52.0 4.34e-01 100.0% 53.7%
3873872 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.63 53.0 3.71e-01 100.0% 60.0%
3401715 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.63 49.0 3.32e-01 97.9% 28.0%
5076902 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 45.0 3.47e-01 77.1% 58.2%
3760172 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 51.0 4.49e-01 100.0% 61.3%
3424337 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.62 49.0 4.35e-01 97.9% 61.3%
3734655 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.62 50.0 3.49e-01 100.0% 46.2%
4656508 4156.1.1.4 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.62 49.0 3.27e-01 97.9% 27.4%
3615306 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.62 50.0 3.12e-01 91.7% 32.9%
3967741 564.1.1.3 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › DUF4880 0.62 53.0 5.02e-01 100.0% 80.0%
3599682 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.61 49.0 3.48e-01 91.7% 54.4%
3882807 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 48.0 4.33e-01 100.0% 63.7%
4984058 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 48.0 4.98e-01 89.6% 100.0%
3870636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.43e-01 95.8% 96.9%
4928805 101.1.2.233 alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.58 46.0 4.19e-01 97.9% 70.7%
3738569 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.57 47.0 3.70e-01 93.8% 91.4%
3901620 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.57 43.0 3.84e-01 83.3% 58.6%
3280612 564.1.1.2 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › zf-HC2 0.57 46.0 4.18e-01 95.8% 67.1%
4239374 4156.1.1.4 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.56 46.0 3.35e-01 100.0% 49.0%
3482273 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.54 46.0 3.60e-01 97.9% 89.9%
4026926 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.54 45.0 3.35e-01 100.0% 94.1%