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JX238501.3__AGB62633.1__X__00187

Bact-Vir

JX238501.3__AGB62633.1__X__00187

Identity

Accession:
JX238501 ↗
Kingdom:
phage

Quality

60.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Agatevirus› Bacillus_phage_phiAGATE

TaxID: 1204533

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-208
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pijA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.67 47.0 3.91e-01 73.6% 77.2%
3b5qA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.65 54.0 3.36e-01 88.5% 44.8%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 45.0 3.67e-01 73.6% 72.8%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 45.0 3.70e-01 72.4% 73.9%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 44.0 3.78e-01 73.6% 84.3%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 44.0 3.26e-01 73.6% 68.2%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 45.0 3.81e-01 74.7% 83.6%
7vcoA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 46.0 3.85e-01 78.2% 76.7%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 46.0 3.55e-01 78.2% 83.7%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 46.0 3.62e-01 78.2% 81.4%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.61 43.0 3.36e-01 72.4% 74.0%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.61 44.0 3.57e-01 77.0% 79.3%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.85e-01 78.2% 87.3%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 40.0 2.85e-01 70.1% 50.9%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 50.0 4.49e-01 93.1% 86.9%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 44.0 3.53e-01 78.2% 70.3%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 3.02e-01 72.4% 59.0%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.59 41.0 2.84e-01 72.4% 90.6%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.58 40.0 2.93e-01 70.1% 73.1%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 42.0 3.05e-01 78.2% 65.7%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.95e-01 85.1% 95.5%
7qs4A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.57 41.0 3.26e-01 74.7% 77.7%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.57 39.0 3.78e-01 72.4% 61.4%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 41.0 3.25e-01 75.9% 62.9%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.35e-01 77.0% 73.1%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 4.00e-01 88.5% 80.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.56 43.0 4.12e-01 81.6% 81.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 41.0 3.58e-01 80.5% 98.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.92e-01 92.0% 91.0%
7qryB01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 40.0 3.36e-01 75.9% 76.5%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.14e-01 82.8% 88.6%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 3.09e-01 73.6% 62.9%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 35.0 3.81e-01 72.4% 80.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.91e-01 89.7% 94.5%
1d2sA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.20e-01 78.2% 67.6%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.54 40.0 3.83e-01 79.3% 94.1%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.02e-01 80.5% 35.0%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.97e-01 87.4% 86.4%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.08e-01 80.5% 72.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 39.0 4.06e-01 82.8% 95.2%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.50e-01 87.4% 71.7%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.50 39.0 3.42e-01 88.5% 69.4%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3758841 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.66 54.0 3.31e-01 87.4% 39.8%
4519672 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.66 46.0 3.87e-01 72.4% 77.1%
3599890 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 46.0 3.87e-01 73.6% 73.8%
3593463 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.65 46.0 3.80e-01 73.6% 71.3%
4289134 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.65 44.0 3.54e-01 70.1% 67.9%
1106 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.64 45.0 3.66e-01 73.6% 72.0%
3739398 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.64 45.0 3.55e-01 72.4% 72.4%
4259150 295.1.1.46 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.64 52.0 4.50e-01 88.5% 91.9%
1269361 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.64 45.0 3.67e-01 72.4% 72.4%
4003998 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.63 48.0 4.18e-01 80.5% 93.1%
4623774 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.63 44.0 3.76e-01 72.4% 73.6%
3739232 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.63 44.0 3.49e-01 72.4% 77.1%
4496880 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.62 44.0 3.39e-01 72.4% 69.0%
4574034 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.62 44.0 3.60e-01 73.6% 73.1%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.62 47.0 4.70e-01 80.5% 100.0%
4203220 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.62 43.0 3.38e-01 72.4% 75.0%
4157696 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.62 46.0 3.62e-01 78.2% 87.2%
4479457 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.62 44.0 3.49e-01 73.6% 72.2%
3430795 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.61 45.0 3.38e-01 78.2% 69.8%
3599615 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.60 45.0 3.52e-01 79.3% 74.2%
3757999 219.1.1.9 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 0.58 40.0 2.75e-01 70.1% 66.1%
3813951 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.58 48.0 3.96e-01 89.7% 65.2%
4614038 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 45.0 3.93e-01 85.1% 95.5%
820 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 45.0 4.00e-01 88.5% 80.9%
None — 0.56 41.0 2.46e-01 78.2% 11.3%
3701944 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.56 46.0 3.66e-01 89.7% 66.9%
3627907 2007.1.19.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like 0.56 41.0 2.45e-01 78.2% 11.2%
5083781 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 39.0 3.17e-01 73.6% 48.8%
3410208 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 46.0 3.67e-01 89.7% 62.9%
3537588 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 46.0 3.64e-01 89.7% 61.7%
3258204 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 46.0 3.66e-01 89.7% 63.5%
3597646 331.17.1.0 ↗ a+b two layers › TBP-like › Atp11 › Atp11 0.55 46.0 3.62e-01 89.7% 66.9%
4309285 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.55 38.0 3.00e-01 71.3% 59.5%
3239485 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 46.0 4.01e-01 92.0% 87.7%
4139128 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.54 39.0 3.49e-01 75.9% 56.8%
4934744 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.54 43.0 2.93e-01 87.4% 29.4%
3238801 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.54 44.0 2.81e-01 87.4% 24.9%
3820070 5.1.2.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.54 35.0 2.67e-01 72.4% 24.9%
4946341 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 37.0 2.64e-01 71.3% 26.5%
1063623 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 43.0 3.79e-01 93.1% 90.6%
3727946 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.53 37.0 3.36e-01 72.4% 61.7%
3648040 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.53 43.0 3.46e-01 88.5% 67.1%
3815252 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.52 37.0 3.54e-01 74.7% 100.0%
3228995 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 41.0 2.57e-01 87.4% 94.1%
3821678 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 37.0 3.36e-01 75.9% 85.0%
3389900 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 39.0 3.07e-01 83.9% 86.3%
3567966 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 40.0 3.92e-01 87.4% 78.9%
D2 high residues 254-333
PDB
Domain cluster: rep: MT151604.1__QIW88646.1__P59_048__00048__D139-213
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.67 59.0 5.10e-01 100.0% 94.5%
5b7cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 46.0 4.11e-01 80.0% 67.6%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 50.0 4.34e-01 88.7% 58.5%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.61 53.0 4.56e-01 100.0% 66.4%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 43.0 4.19e-01 76.2% 78.4%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.60 52.0 4.25e-01 98.8% 64.9%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 39.0 3.68e-01 78.8% 57.3%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.57 36.0 3.43e-01 80.0% 52.6%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.57 48.0 4.06e-01 91.3% 86.7%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 40.0 3.61e-01 73.8% 86.4%
3lewA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 49.0 3.30e-01 97.5% 73.6%
2xheA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 36.0 3.16e-01 88.7% 44.1%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 44.0 4.03e-01 88.7% 70.6%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.55 46.0 4.11e-01 93.8% 97.4%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 44.0 3.72e-01 90.0% 94.4%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.86e-01 93.8% 97.1%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 3.40e-01 80.0% 73.4%
2j0jA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.54 46.0 4.05e-01 96.2% 75.4%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.54 47.0 4.10e-01 100.0% 96.1%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 41.0 3.99e-01 83.7% 80.2%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.59e-01 98.8% 75.8%
4pjjA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.53 44.0 3.89e-01 97.5% 60.8%
3nf4A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 37.0 3.30e-01 72.5% 75.6%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 44.0 3.16e-01 88.7% 38.8%
1c3yA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.52 41.0 3.76e-01 86.3% 91.7%
1bhdA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.52 42.0 3.78e-01 86.3% 88.0%
2qptA01 1.10.268.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › 0.51 46.0 3.75e-01 98.8% 56.2%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.51 40.0 3.97e-01 87.5% 97.7%
2ijqA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.51 44.0 3.68e-01 97.5% 86.9%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 36.0 3.53e-01 73.8% 74.7%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.16e-01 87.5% 50.0%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 4.09e-01 93.8% 87.6%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.51 38.0 3.28e-01 85.0% 84.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 43.0 3.56e-01 96.2% 91.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4386248 101.1.1.16 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA 0.73 51.0 5.03e-01 75.0% 68.2%
1498377 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.69 36.0 3.51e-01 91.3% 44.9%
3944499 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.66 51.0 5.03e-01 83.7% 77.6%
3977923 633.6.1.10 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACDH_C 0.66 58.0 4.20e-01 98.8% 64.0%
3838594 7023.1.1.0 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.62 35.0 3.01e-01 97.5% 36.0%
3654589 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.59 49.0 4.73e-01 88.7% 98.9%
3717572 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.56 49.0 4.26e-01 97.5% 89.6%
1396776 4984.1.1.1 ↗ alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › PFEMP 0.56 45.0 3.69e-01 87.5% 94.0%
3715903 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 48.0 4.21e-01 98.8% 97.6%
3700655 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 40.0 3.14e-01 76.2% 50.3%
4024434 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 41.0 2.93e-01 87.5% 25.3%
3472756 2002.1.1.56 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.54 44.0 3.11e-01 95.0% 49.3%
3241743 109.24.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_C 0.54 48.0 4.02e-01 100.0% 95.7%
3940575 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.56e-01 98.8% 87.7%
3415982 601.16.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.53 44.0 3.71e-01 95.0% 78.6%
5011909 5069.1.3.136 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › MS_channel_1st 0.53 44.0 3.81e-01 90.0% 81.7%
4200315 604.6.1.59 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › PigN 0.52 47.0 3.93e-01 98.8% 63.7%
3727276 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 42.0 4.06e-01 87.5% 98.9%
5077106 3861.1.1.0 ↗ alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) 0.51 42.0 3.77e-01 91.3% 64.0%
5052881 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.50 41.0 3.14e-01 93.8% 89.0%
3931179 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.50 45.0 4.47e-01 98.8% 94.1%
D3 medium residues 5-96
PDB