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JX483873.1__AGC35522.1__RHEph01_gp011__00011
Bact-VirJX483873.1__AGC35522.1__RHEph01_gp011__00011
Identity
- Accession:
- JX483873 ↗
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Paadamvirus›
Rhizobium_phage_RHEph01
TaxID: 1220601
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-110
Domain cluster:
rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02498.23 best | Bro-N | 51.3 | 2.00e-13 | 88.8% | 100.0% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.74 | 58.0 | 5.98e-01 | 94.4% | 89.9% |
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.72 | 56.0 | 5.79e-01 | 82.2% | 93.1% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.70 | 38.0 | 3.48e-01 | 71.0% | 40.7% |
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.66 | 51.0 | 5.21e-01 | 83.2% | 87.7% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.59 | 32.0 | 4.04e-01 | 81.3% | 87.9% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 42.0 | 4.18e-01 | 92.5% | 79.3% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.54 | 40.0 | 4.32e-01 | 100.0% | 94.4% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 4.16e-01 | 85.0% | 93.9% |
| 1v1pB02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 28.0 | 3.25e-01 | 96.3% | 73.0% |
| 1g3pA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.51 | 25.0 | 2.75e-01 | 99.1% | 53.4% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 29.0 | 3.65e-01 | 87.9% | 95.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.89 | 80.0 | 8.08e-01 | 100.0% | 94.3% |
| 3163642 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.78 | 73.0 | 7.22e-01 | 99.1% | 95.5% |
| 4032453 | 101.1.9.78 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA | 0.76 | 62.0 | 6.53e-01 | 86.0% | 100.0% |
| 3529465 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.73 | 57.0 | 5.79e-01 | 82.2% | 89.5% |
| 3740323 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.73 | 60.0 | 5.85e-01 | 100.0% | 81.7% |
| 3798287 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.73 | 57.0 | 6.01e-01 | 82.2% | 98.9% |
| 3941747 | 101.1.9.78 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA | 0.72 | 64.0 | 6.41e-01 | 96.3% | 100.0% |
| 3983963 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.72 | 63.0 | 6.44e-01 | 95.3% | 100.0% |
| 3516620 | 101.1.9.107 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867 | 0.71 | 54.0 | 5.66e-01 | 79.4% | 100.0% |
| 4954530 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.70 | 62.0 | 6.11e-01 | 97.2% | 100.0% |
| 3947416 | 101.1.9.88 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha | 0.70 | 62.0 | 6.17e-01 | 96.3% | 98.2% |
| 4453958 | 274.1.1.23 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF5374 | 0.68 | 23.0 | 3.09e-01 | 72.0% | 53.3% |
| 4998593 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.68 | 52.0 | 5.07e-01 | 81.3% | 73.9% |
| 3888996 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.68 | 53.0 | 5.59e-01 | 83.2% | 97.9% |
| 3932937 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.67 | 52.0 | 5.54e-01 | 83.2% | 97.9% |
| 3525074 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.67 | 51.0 | 5.47e-01 | 80.4% | 100.0% |
| 3893451 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.66 | 52.0 | 5.28e-01 | 83.2% | 88.6% |
| 4003595 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.66 | 51.0 | 4.80e-01 | 82.2% | 70.5% |
| 3480621 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.66 | 51.0 | 5.38e-01 | 82.2% | 96.8% |
| 3944712 | 101.1.9.40 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N | 0.65 | 53.0 | 5.36e-01 | 87.9% | 91.4% |
| 4546946 | 101.1.9.25 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › INI1_DNA-bd | 0.64 | 55.0 | 5.39e-01 | 93.5% | 89.6% |
| 3978692 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.64 | 58.0 | 5.20e-01 | 100.0% | 91.3% |
| 3395918 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 55.0 | 5.41e-01 | 94.4% | 93.9% |
| 3230106 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 49.0 | 5.11e-01 | 82.2% | 96.0% |
| 4136892 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 27.0 | 3.12e-01 | 91.6% | 55.0% |
| 3400699 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.59 | 46.0 | 4.72e-01 | 85.0% | 98.1% |
| 4968774 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.59 | 25.0 | 2.96e-01 | 96.3% | 53.3% |
| 3468948 | 904.1.1.5 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PLATZ | 0.57 | 46.0 | 4.09e-01 | 87.9% | 83.9% |
| 1159602 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 42.0 | 4.16e-01 | 92.5% | 78.6% |
| 3214527 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 46.0 | 4.42e-01 | 92.5% | 84.8% |
| 4029339 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 42.0 | 3.66e-01 | 86.0% | 74.9% |
| 5023789 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 33.0 | 3.57e-01 | 94.4% | 75.3% |
| 3222982 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.51 | 44.0 | 4.01e-01 | 98.1% | 100.0% |
| 3439866 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.51 | 34.0 | 3.10e-01 | 83.2% | 49.7% |
| 3724051 | 6044.1.1.0 ↗ | a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like | 0.50 | 34.0 | 3.48e-01 | 99.1% | 70.5% |