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JX483876.1__AGC35687.1__RHEph04_gp001__00001
Bact-VirJX483876.1__AGC35687.1__RHEph04_gp001__00001
Identity
- Accession:
- JX483876 ↗
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Taxonomy
TaxID: 1220604
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-94
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.78 | 61.0 | 6.22e-01 | 91.5% | 87.9% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.75 | 61.0 | 6.27e-01 | 94.9% | 93.0% |
| 3nkyA03 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.75 | 55.0 | 5.17e-01 | 100.0% | 64.4% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.73 | 63.0 | 5.80e-01 | 96.6% | 77.9% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 50.0 | 4.25e-01 | 72.9% | 71.7% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.72 | 60.0 | 5.49e-01 | 100.0% | 69.2% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.72 | 54.0 | 5.34e-01 | 93.2% | 77.0% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.72 | 60.0 | 5.07e-01 | 94.9% | 78.6% |
| 1qgrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.70 | 61.0 | 3.38e-01 | 100.0% | 10.0% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.70 | 58.0 | 4.26e-01 | 98.3% | 43.8% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.70 | 60.0 | 5.11e-01 | 98.3% | 63.0% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.69 | 59.0 | 4.77e-01 | 98.3% | 68.9% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.69 | 59.0 | 4.82e-01 | 100.0% | 82.2% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 56.0 | 4.89e-01 | 96.6% | 64.9% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 57.0 | 4.75e-01 | 96.6% | 89.7% |
| 1li5A02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.68 | 55.0 | 4.89e-01 | 91.5% | 64.4% |
| 1iq0A03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.68 | 57.0 | 4.67e-01 | 98.3% | 73.3% |
| 2iexA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.68 | 43.0 | 4.58e-01 | 71.2% | 72.5% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.67 | 56.0 | 4.40e-01 | 100.0% | 65.5% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 57.0 | 5.30e-01 | 98.3% | 80.3% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 52.0 | 4.70e-01 | 94.9% | 63.5% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 53.0 | 4.54e-01 | 96.6% | 97.1% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 53.0 | 4.24e-01 | 100.0% | 64.7% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.64 | 49.0 | 4.43e-01 | 86.4% | 82.6% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 5.05e-01 | 96.6% | 87.3% |
| 7ep1B01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 53.0 | 3.62e-01 | 100.0% | 29.3% |
| 1d2dA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.62 | 49.0 | 4.99e-01 | 94.9% | 94.6% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.62 | 51.0 | 4.71e-01 | 98.3% | 79.3% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.61 | 48.0 | 4.81e-01 | 91.5% | 88.9% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.59 | 48.0 | 4.23e-01 | 93.2% | 89.1% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.58 | 47.0 | 3.61e-01 | 96.6% | 64.7% |
| 3owaB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 46.0 | 3.47e-01 | 94.9% | 68.8% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 44.0 | 3.04e-01 | 88.1% | 63.0% |
| 8gj8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 43.0 | 2.98e-01 | 91.5% | 23.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4848264 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.74 | 65.0 | 5.64e-01 | 100.0% | 80.4% |
| 2739320 | 109.4.1.92 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 64.0 | 4.35e-01 | 100.0% | 38.0% |
| 3618836 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 65.0 | 4.16e-01 | 100.0% | 34.2% |
| 3268456 | 109.6.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF | 0.69 | 58.0 | 4.34e-01 | 96.6% | 38.7% |
| 3222674 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 60.0 | 4.27e-01 | 100.0% | 34.1% |
| 4307275 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 57.0 | 4.61e-01 | 98.3% | 47.8% |
| 5074120 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.69 | 55.0 | 4.69e-01 | 98.3% | 54.7% |
| 3733091 | 109.58.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C | 0.68 | 58.0 | 4.83e-01 | 100.0% | 72.7% |
| 3384514 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.67 | 58.0 | 5.44e-01 | 100.0% | 90.7% |
| 3796824 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.67 | 52.0 | 4.99e-01 | 96.6% | 74.3% |
| 4604117 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.67 | 55.0 | 4.61e-01 | 96.6% | 70.0% |
| 3450780 | 109.4.1.293 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPP2R1A-like_HEAT | 0.66 | 56.0 | 3.48e-01 | 100.0% | 17.3% |
| 5043888 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 49.0 | 4.84e-01 | 89.8% | 75.4% |
| 4652999 | 192.11.1.2 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › CysS_C | 0.65 | 54.0 | 4.12e-01 | 98.3% | 40.9% |
| 1806460 | 604.1.1.8 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SbsC_spectrin-like | 0.63 | 52.0 | 5.16e-01 | 96.6% | 92.1% |
| 1175575 | 109.4.1.292 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like | 0.62 | 48.0 | 4.92e-01 | 98.3% | 91.2% |
| 4970859 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.61 | 48.0 | 4.10e-01 | 96.6% | 52.0% |
| 3821013 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 49.0 | 2.84e-01 | 100.0% | 9.4% |
| 3477472 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 49.0 | 4.16e-01 | 100.0% | 81.8% |
| 5076422 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.59 | 50.0 | 3.69e-01 | 100.0% | 63.5% |
| 3491082 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.56 | 40.0 | 3.78e-01 | 76.3% | 62.2% |
| 3452139 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.55 | 46.0 | 2.95e-01 | 94.9% | 50.5% |
| 3784238 | 3758.1.1.99 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Tht1 | 0.55 | 47.0 | 4.20e-01 | 98.3% | 91.8% |
| 3650657 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.54 | 43.0 | 2.88e-01 | 93.2% | 54.9% |
| 4034597 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.53 | 45.0 | 2.95e-01 | 100.0% | 44.4% |
| 3495314 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.52 | 36.0 | 3.34e-01 | 79.7% | 56.2% |