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JX483881.1__AGC36164.1__RHEph10_gp121__00120
Bact-VirJX483881.1__AGC36164.1__RHEph10_gp121__00120
Identity
- Accession:
- JX483881 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-74
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00070__D6-65
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dpjF00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 41.0 | 2.97e-01 | 90.1% | 23.4% |
| 4nkwA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 49.0 | 3.03e-01 | 87.3% | 67.9% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 48.0 | 3.20e-01 | 84.5% | 32.1% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.61 | 45.0 | 3.56e-01 | 81.7% | 64.4% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 44.0 | 4.21e-01 | 100.0% | 66.7% |
| 4h2uD00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.60 | 49.0 | 4.79e-01 | 93.0% | 96.2% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.58 | 44.0 | 3.95e-01 | 83.1% | 95.2% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.57 | 40.0 | 3.62e-01 | 93.0% | 52.5% |
| 4g3aB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.57 | 44.0 | 3.05e-01 | 83.1% | 34.2% |
| 1dnyA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.57 | 41.0 | 4.11e-01 | 85.9% | 75.0% |
| 6igxD01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 43.0 | 3.00e-01 | 85.9% | 34.0% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 47.0 | 3.99e-01 | 95.8% | 64.2% |
| 2cq8A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.56 | 46.0 | 4.44e-01 | 93.0% | 95.1% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.55 | 41.0 | 3.68e-01 | 83.1% | 88.2% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.55 | 45.0 | 4.34e-01 | 91.5% | 83.1% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 47.0 | 4.13e-01 | 100.0% | 86.6% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 45.0 | 4.28e-01 | 100.0% | 81.3% |
| 3t8vA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.54 | 44.0 | 2.84e-01 | 90.1% | 40.4% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.54 | 36.0 | 3.62e-01 | 97.2% | 66.7% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 44.0 | 4.01e-01 | 97.2% | 69.9% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.53 | 42.0 | 3.65e-01 | 88.7% | 61.9% |
| 4h2wC00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.52 | 41.0 | 4.05e-01 | 93.0% | 97.4% |
| 3qnfA04 | 1.10.3480.20 | Mainly Alpha › Orthogonal Bundle › TorD-like › | 0.52 | 38.0 | 2.89e-01 | 78.9% | 39.5% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 45.0 | 3.69e-01 | 100.0% | 87.5% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 38.0 | 3.19e-01 | 78.9% | 65.0% |
| 7x0fB01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.51 | 41.0 | 4.15e-01 | 94.4% | 97.3% |
| 1am4A00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.51 | 41.0 | 3.01e-01 | 100.0% | 31.7% |
| 4gc3A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 45.0 | 3.06e-01 | 100.0% | 58.6% |
| 2odaA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.50 | 43.0 | 3.22e-01 | 97.2% | 38.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3958350 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.63 | 45.0 | 4.23e-01 | 74.6% | 92.9% |
| 3177917 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.61 | 46.0 | 3.92e-01 | 80.3% | 62.6% |
| 3598764 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 46.0 | 3.27e-01 | 84.5% | 36.3% |
| 3710679 | 109.4.1.1276 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR | 0.58 | 46.0 | 2.72e-01 | 87.3% | 12.7% |
| 3244102 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.57 | 42.0 | 3.71e-01 | 100.0% | 51.8% |
| 3242033 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.57 | 37.0 | 3.38e-01 | 81.7% | 48.0% |
| 3846390 | 2008.1.1.84 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector | 0.57 | 50.0 | 3.57e-01 | 100.0% | 61.9% |
| 3611674 | 109.4.1.1276 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR | 0.57 | 46.0 | 3.37e-01 | 88.7% | 41.5% |
| 3259115 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 42.0 | 4.02e-01 | 97.2% | 70.2% |
| 3923118 | 3473.1.1.10 ↗ | extended segments › Twin-arginine transport (Tat) system component TatA › Twin-arginine transport (Tat) system component TatA › Twin-arginine transport (Tat) system component TatA › ASC | 0.55 | 40.0 | 2.88e-01 | 78.9% | 30.0% |
| 4964892 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.54 | 47.0 | 3.81e-01 | 100.0% | 77.9% |
| 4252806 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.53 | 45.0 | 3.37e-01 | 100.0% | 77.5% |
| 3924238 | 3722.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain | 0.52 | 37.0 | 2.55e-01 | 73.2% | 25.5% |
| 4812690 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.52 | 43.0 | 3.60e-01 | 100.0% | 52.8% |
| 3571379 | 193.1.1.18 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › DUF2465 | 0.52 | 41.0 | 3.44e-01 | 87.3% | 69.6% |
| 3288128 | 1079.1.1.7 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › SfLAP | 0.51 | 42.0 | 3.26e-01 | 95.8% | 66.7% |
| 5053761 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 4.20e-01 | 98.6% | 87.5% |
| 3649776 | 109.4.1.330 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BIG2_C | 0.50 | 40.0 | 2.66e-01 | 85.9% | 46.7% |
| 3970147 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.50 | 40.0 | 3.89e-01 | 93.0% | 83.5% |
D2
high
residues 80-149
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kbgA03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 38.0 | 4.22e-01 | 100.0% | 76.8% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.59 | 35.0 | 4.13e-01 | 100.0% | 87.5% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.59 | 44.0 | 4.64e-01 | 100.0% | 87.3% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 33.0 | 3.38e-01 | 100.0% | 60.9% |
| 2ra9A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.52 | 32.0 | 3.16e-01 | 98.6% | 54.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5017637 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.71 | 41.0 | 4.63e-01 | 100.0% | 74.5% |
| 4480519 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 40.0 | 4.37e-01 | 100.0% | 75.0% |
| 4110878 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 40.0 | 4.77e-01 | 100.0% | 100.0% |
| 5022892 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.50 | 29.0 | 3.23e-01 | 94.3% | 72.7% |