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JX483881.1__AGC36174.1__RHEph10_gp131__00130

Bact-Vir

JX483881.1__AGC36174.1__RHEph10_gp131__00130

Identity

Accession:
JX483881 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.77 58.0 4.39e-01 100.0% 35.9%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.77 55.0 5.28e-01 100.0% 65.6%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.77 58.0 4.65e-01 100.0% 44.2%
3uarA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.76 55.0 4.25e-01 100.0% 37.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.76 55.0 4.26e-01 100.0% 37.7%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 59.0 4.74e-01 100.0% 44.6%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 57.0 5.58e-01 100.0% 74.1%
4hojA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 56.0 4.39e-01 100.0% 41.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.72 54.0 3.90e-01 81.1% 94.6%
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 59.0 4.64e-01 100.0% 42.7%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 53.0 4.89e-01 100.0% 62.7%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 58.0 4.30e-01 88.7% 91.6%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 60.0 5.32e-01 100.0% 71.6%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.69 50.0 3.77e-01 77.4% 67.9%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.69 49.0 4.58e-01 100.0% 60.6%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 54.0 4.70e-01 100.0% 57.1%
3ppuB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 52.0 4.03e-01 100.0% 38.1%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 50.0 4.53e-01 100.0% 56.0%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 54.0 4.77e-01 100.0% 59.5%
2oceA01 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.68 61.0 4.74e-01 100.0% 63.7%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 56.0 4.81e-01 100.0% 58.0%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 53.0 3.92e-01 100.0% 34.4%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 59.0 4.28e-01 100.0% 75.3%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.66 54.0 3.53e-01 100.0% 22.1%
5aj3N01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 44.0 3.68e-01 98.1% 40.7%
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.65 55.0 4.09e-01 94.3% 60.6%
7ep1B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 53.0 3.45e-01 90.6% 32.6%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.65 53.0 3.59e-01 90.6% 44.1%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 53.0 3.34e-01 90.6% 32.8%
8d8lN01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 44.0 3.78e-01 100.0% 45.3%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.64 56.0 3.57e-01 100.0% 47.7%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 53.0 3.94e-01 94.3% 66.7%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.64 54.0 4.60e-01 100.0% 58.1%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 51.0 4.95e-01 100.0% 79.7%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 4.61e-01 100.0% 62.3%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.63 48.0 4.88e-01 100.0% 88.2%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 57.0 4.65e-01 98.1% 83.7%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.62 55.0 5.17e-01 98.1% 93.8%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 51.0 4.12e-01 100.0% 47.1%
5u56A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 55.0 4.27e-01 100.0% 48.2%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.61 43.0 3.55e-01 75.5% 55.7%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.61 55.0 4.65e-01 100.0% 87.1%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 49.0 4.72e-01 98.1% 77.4%
1hu3A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 51.0 3.44e-01 96.2% 38.7%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 47.0 4.23e-01 90.6% 93.6%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 5.12e-01 98.1% 92.9%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 51.0 4.03e-01 100.0% 46.4%
2fq3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.29e-01 96.2% 95.3%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 51.0 5.10e-01 100.0% 96.3%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 49.0 3.71e-01 92.5% 78.9%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 50.0 3.11e-01 100.0% 17.4%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 3.51e-01 88.7% 52.2%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.58 41.0 3.72e-01 98.1% 52.5%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.57 50.0 3.93e-01 96.2% 48.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 51.0 4.88e-01 100.0% 90.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.57 48.0 4.58e-01 100.0% 89.2%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 50.0 3.91e-01 100.0% 49.1%
3ecqA07 6.10.140.660 Special › Helix non-globular › Helix Hairpins › 0.56 34.0 3.65e-01 92.5% 71.1%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 43.0 4.09e-01 94.3% 75.8%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.88e-01 98.1% 95.1%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 43.0 3.43e-01 100.0% 49.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033238 101.1.2.804 alpha arrays › HTH › HTH › winged helix domain › PF27113 0.78 61.0 4.08e-01 100.0% 24.6%
3967403 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.78 61.0 5.60e-01 100.0% 66.2%
3294437 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.78 60.0 5.12e-01 100.0% 53.8%
3339561 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 60.0 4.70e-01 100.0% 43.0%
3408277 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.77 60.0 4.48e-01 100.0% 37.4%
4184330 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.77 59.0 4.68e-01 100.0% 43.0%
3968484 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 59.0 5.30e-01 100.0% 61.4%
3251379 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 58.0 4.88e-01 100.0% 50.6%
4300897 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.75 60.0 4.31e-01 100.0% 33.8%
4045132 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.74 56.0 4.35e-01 100.0% 39.1%
3996074 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 55.0 3.46e-01 100.0% 16.5%
4311810 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.72 55.0 4.85e-01 100.0% 57.3%
3269316 377.1.1.2 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 0.71 47.0 3.86e-01 98.1% 38.9%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.70 53.0 4.72e-01 100.0% 57.3%
3935467 377.1.1.2 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 0.69 46.0 3.61e-01 98.1% 33.9%
3245543 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 49.0 4.01e-01 77.4% 89.0%
3790121 603.1.1.114 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 0.67 56.0 4.43e-01 100.0% 47.0%
3620630 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 45.0 4.12e-01 98.1% 52.9%
3926999 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.67 40.0 3.42e-01 96.2% 37.6%
3596209 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.67 53.0 3.82e-01 90.6% 78.2%
3271303 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.67 51.0 3.22e-01 100.0% 16.6%
3408508 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.66 55.0 4.70e-01 100.0% 58.7%
3619662 192.12.1.3 alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 0.65 49.0 4.28e-01 100.0% 55.0%
3609984 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.64 56.0 3.85e-01 100.0% 67.2%
4843090 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.62 53.0 4.19e-01 98.1% 58.0%
4000262 192.5.1.1 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.61 57.0 4.68e-01 100.0% 67.8%
3923557 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 57.0 3.71e-01 100.0% 44.0%
4976486 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 39.0 3.76e-01 94.3% 58.3%
5063967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 39.0 3.78e-01 94.3% 60.0%
5062039 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.60 46.0 4.74e-01 83.0% 98.0%
5048987 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 4.10e-01 94.3% 70.4%
3231463 632.8.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.59 53.0 4.37e-01 100.0% 66.3%
5016743 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.65e-01 73.6% 96.0%
3600361 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 52.0 4.30e-01 100.0% 55.8%
3965373 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.59 51.0 4.71e-01 100.0% 95.7%
5039517 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.71e-01 73.6% 92.9%
3684835 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.58 49.0 4.02e-01 100.0% 51.6%
3264568 3748.1.1.3 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C 0.58 46.0 3.65e-01 100.0% 43.8%
4210642 3755.1.1.12 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ 0.58 52.0 3.85e-01 100.0% 52.3%
5048665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.06e-01 88.7% 55.1%
3404575 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.57 36.0 3.05e-01 94.3% 36.7%
3762595 604.7.1.13 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › HR1 0.57 51.0 4.27e-01 100.0% 74.4%
3239585 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.57 49.0 4.43e-01 94.3% 97.1%
3946021 7523.1.1.26 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_6 0.55 49.0 3.13e-01 100.0% 21.9%
3998806 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.54 45.0 4.10e-01 92.5% 74.3%
1247969 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.54 38.0 3.47e-01 96.2% 54.9%
5056126 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.84e-01 86.8% 84.3%
5063200 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.57e-01 94.3% 89.4%