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JX486088.1__AFU63156.1__8014-B2_0089__00089
Bact-VirJX486088.1__AFU63156.1__8014-B2_0089__00089
Identity
- Accession:
- JX486088 ↗
- Kingdom:
- phage
Quality
64.6
mean pLDDT
Taxonomy
TaxID: 1225795
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-106
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.75 | 55.0 | 5.63e-01 | 80.6% | 78.8% |
| 4r9pA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.63 | 43.0 | 2.98e-01 | 70.1% | 82.4% |
| 5d1oA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 45.0 | 4.39e-01 | 80.6% | 69.9% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 45.0 | 4.41e-01 | 80.6% | 72.2% |
| 7t7zA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.62 | 47.0 | 3.66e-01 | 80.6% | 64.9% |
| 2q3xA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.62 | 47.0 | 3.68e-01 | 80.6% | 64.8% |
| 3ld7A00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.62 | 45.0 | 4.10e-01 | 76.1% | 100.0% |
| 4gvbA00 | 3.30.70.440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit | 0.61 | 41.0 | 4.00e-01 | 70.1% | 87.0% |
| 6se8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 46.0 | 3.99e-01 | 82.1% | 88.9% |
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 42.0 | 4.31e-01 | 79.1% | 75.4% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.61 | 42.0 | 3.92e-01 | 71.6% | 94.0% |
| 3hzeA00 | 3.30.70.1860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein family Ycf54 | 0.60 | 44.0 | 3.83e-01 | 79.1% | 95.3% |
| 1vq2A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 41.0 | 3.04e-01 | 71.6% | 85.0% |
| 3v0dA02 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 43.0 | 3.40e-01 | 79.1% | 44.8% |
| 2felA00 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.58 | 39.0 | 2.52e-01 | 70.1% | 59.1% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 47.0 | 4.38e-01 | 95.5% | 86.5% |
| 2hvwA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 40.0 | 3.10e-01 | 73.1% | 79.6% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 38.0 | 3.65e-01 | 70.1% | 96.4% |
| 1ti2B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 3.75e-01 | 79.1% | 58.3% |
| 2xbzA00 | 2.60.40.2380 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 41.0 | 3.34e-01 | 77.6% | 59.1% |
| 1z3aA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 39.0 | 3.01e-01 | 71.6% | 78.2% |
| 3fcgB00 | 2.60.40.3110 | Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein | 0.56 | 36.0 | 3.55e-01 | 79.1% | 59.2% |
| 3tp4B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 42.0 | 3.84e-01 | 80.6% | 86.0% |
| 2pn5A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.56 | 42.0 | 3.76e-01 | 80.6% | 82.3% |
| 3cjiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 41.0 | 2.85e-01 | 79.1% | 55.5% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.56 | 41.0 | 4.11e-01 | 83.6% | 76.4% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.55 | 40.0 | 3.05e-01 | 79.1% | 39.8% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.55 | 40.0 | 3.56e-01 | 80.6% | 87.6% |
| 4dbhA02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.55 | 39.0 | 2.81e-01 | 76.1% | 38.4% |
| 1d2oA01 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.54 | 40.0 | 3.46e-01 | 79.1% | 58.9% |
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.54 | 39.0 | 2.93e-01 | 79.1% | 69.7% |
| 1zq7A01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.54 | 41.0 | 3.39e-01 | 83.6% | 96.9% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 3.67e-01 | 83.6% | 83.5% |
| 2wngA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 3.79e-01 | 83.6% | 92.0% |
| 3dh1B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 38.0 | 2.89e-01 | 74.6% | 46.9% |
| 2b3zD01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 38.0 | 3.04e-01 | 74.6% | 45.9% |
| 6iymA02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.53 | 38.0 | 2.71e-01 | 76.1% | 37.1% |
| 6v77B02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.53 | 38.0 | 2.69e-01 | 76.1% | 37.4% |
| 6wngA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.52 | 36.0 | 2.49e-01 | 73.1% | 79.3% |
| 5lf5A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.64e-01 | 80.6% | 88.0% |
| 6jvvB02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.52 | 37.0 | 2.74e-01 | 76.1% | 38.7% |
| 3nvqA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.63e-01 | 80.6% | 65.5% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 38.0 | 3.10e-01 | 82.1% | 45.7% |
| 3qvaA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.51 | 38.0 | 3.33e-01 | 80.6% | 50.5% |
| 2jjsC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.22e-01 | 80.6% | 70.4% |
| 1vcaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.29e-01 | 80.6% | 87.3% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.50 | 38.0 | 3.29e-01 | 91.0% | 77.1% |
| 7wguB01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.50 | 37.0 | 3.41e-01 | 80.6% | 76.9% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3673008 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.64 | 47.0 | 4.15e-01 | 77.6% | 89.5% |
| 3838723 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 54.0 | 4.06e-01 | 95.5% | 71.5% |
| 4890111 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.62 | 46.0 | 3.45e-01 | 80.6% | 39.3% |
| 5034925 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.60 | 45.0 | 4.00e-01 | 80.6% | 69.0% |
| 4032691 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.60 | 46.0 | 4.18e-01 | 85.1% | 92.6% |
| 4245789 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.60 | 45.0 | 4.17e-01 | 83.6% | 97.8% |
| 3604585 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 47.0 | 4.02e-01 | 83.6% | 55.2% |
| 3590397 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 44.0 | 3.96e-01 | 80.6% | 61.1% |
| 5036532 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 3.63e-01 | 80.6% | 72.0% |
| 5001609 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 43.0 | 3.65e-01 | 79.1% | 65.5% |
| 5054718 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 43.0 | 4.03e-01 | 80.6% | 68.2% |
| 5010852 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 44.0 | 3.84e-01 | 80.6% | 62.0% |
| 5005349 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 41.0 | 2.56e-01 | 79.1% | 11.8% |
| 3517316 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 43.0 | 3.74e-01 | 83.6% | 55.5% |
| 3911204 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.57 | 40.0 | 3.89e-01 | 74.6% | 68.0% |
| 3536238 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.57 | 43.0 | 3.57e-01 | 83.6% | 71.2% |
| 5041113 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 41.0 | 3.76e-01 | 80.6% | 57.8% |
| 5060696 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 41.0 | 3.44e-01 | 77.6% | 53.9% |
| 3395144 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 42.0 | 3.54e-01 | 80.6% | 70.4% |
| 5083569 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.93e-01 | 80.6% | 71.2% |
| 2995198 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.55 | 39.0 | 2.92e-01 | 77.6% | 67.9% |
| 3971219 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.55 | 39.0 | 2.70e-01 | 76.1% | 30.0% |
| 5018457 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 38.0 | 3.78e-01 | 80.6% | 67.1% |
| 3216491 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 42.0 | 3.15e-01 | 83.6% | 72.6% |
| 4962500 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.08e-01 | 80.6% | 66.9% |
| 4251299 | 11.1.1.852 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 | 0.55 | 40.0 | 3.28e-01 | 80.6% | 66.7% |
| 4929252 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 3.40e-01 | 80.6% | 73.3% |
| 4930907 | 4139.1.1.1 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 | 0.54 | 41.0 | 3.38e-01 | 80.6% | 87.2% |
| 3533082 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.54 | 41.0 | 3.38e-01 | 83.6% | 73.6% |
| 4943341 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.53 | 38.0 | 3.43e-01 | 77.6% | 93.0% |
| 3279683 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 39.0 | 3.42e-01 | 77.6% | 78.0% |
| 4944597 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 3.36e-01 | 80.6% | 88.7% |
| 3915796 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 39.0 | 3.31e-01 | 80.6% | 60.0% |
| 4165507 | 11.9.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase | 0.53 | 38.0 | 2.52e-01 | 76.1% | 26.7% |
| 5014007 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.53 | 35.0 | 3.77e-01 | 70.1% | 87.3% |
| 4963686 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.53 | 38.0 | 3.18e-01 | 77.6% | 74.2% |
| 3856635 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.51e-01 | 79.1% | 86.7% |
| 4021799 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.00e-01 | 80.6% | 74.7% |
| 3726357 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 45.0 | 4.04e-01 | 100.0% | 75.8% |